Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2198 atgaaaaagaacaAGGATACTTTCTGGGTAGAATCAATGGAATCCGCTTTCCACTCAGTGCAACCATATGCTATTTGCCAAGTATTGCAGTTGGAGAGTGAGATTCTTTGTGTGAAGGATGTTGAAGCtgtttttctttccttcaattCCATTAGCAAGATTTTGGGAATAATAGGAGTCAGGAAGCGACCCTGGGGTCGTTACGCCGCTGAGATACGCGATCCTTGGAAGAAGACGCGTGTTTGGTTGGGTACATTCGACACTCCCGAAGAGGCCGCTCTTGCCTACGACGGCGCCGCCCGTTCCCTCCGCGGCCCCAAGGCCAAGACCAACTTCCCTCCCGCCCCCGTCCCCCCTCTCGACCTCAACGTCCCAACCTCCGATCATCATCGCTGGCCTCCCATTCCCTCCGGTCGCCTCGTCCTCAATGAGCTCCTTCACGCCGGTGTTCTCAAGGACATTACCTGCGTCGATCCTCCTCCGCCGCCTCCTCCGGTCGTGGCGCACAACCGCCGTGACGGTTCCGTCGCTGTGGGTGGCGGCCTTCATCAGATGCCGGAGAGCTCTCCAACGGCGTCGTTTCTTGGTCTTGTTCGACGAGGGCTTCCGATTGACTTGAACGAGCCTCCTCCCTTGTGGCTATGA 645 0.5488 MKKNKDTFWVESMESAFHSVQPYAICQVLQLESEILCVKDVEAVFLSFNSISKILGIIGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGPKAKTNFPPAPVPPLDLNVPTSDHHRWPPIPSGRLVLNELLHAGVLKDITCVDPPPPPPPVVAHNRRDGSVAVGGGLHQMPESSPTASFLGLVRRGLPIDLNEPPPLWL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2198 214 Gene3D AP2/ERF domain 58 114 IPR036955 GO:0003700|GO:0006355
Sto13g2198 214 CDD AP2 59 115 IPR001471 GO:0003700|GO:0006355
Sto13g2198 214 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Sto13g2198 214 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Sto13g2198 214 SUPERFAMILY DNA-binding domain 57 113 IPR016177 GO:0003677
Sto13g2198 214 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 59 203 - -
Sto13g2198 214 Pfam AP2 domain 56 105 IPR001471 GO:0003700|GO:0006355
Sto13g2198 214 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Sto13g2198 214 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Sto13g2198 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 59 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2198 Sto-Chr13 28838506 28840510 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2198 46 214 AP2-EREBP Transcription Factor Family AT1G28360 45.545 7.73e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto13g2198 AP2 9.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2198 - - gmx:100802655 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2198 13 28838506 28840510 Sto13g2198 13 28838506 28840510 ECH