Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2193 ATGAATGGAGTGGAGGTTGACTATGTACATTTTATGTCTGTTCCTACTTCATTTTCACTATCCCCAACCTTAGAATTTGCAATGGGTACGGAGAAGCCCGCCGCCGTTAAATCCAACGCTCACGCTGCTCTGAAGGAGGTGCATTTCAGGGGTGTCAGGAAGAGGCCGTGGGGGAGATATGCGGCTGAGATAAGAGATCCAGGCAAGAAGAGCCGCGTTTGGCTCGGCACTTTCGATACGGCTGAAGAAGCGGCTCGAGCCTACGACGCCGCTGCCAGGGAGTTCCGTGGAGCCAAGGCCAAAACCAACTTCCCTCTCTCTTCTCACAATCTCAACCTCAGCCATACCAGTCCGGCTCAGAGCAGTACGGTCGAGTCCTCCAGCCGTGACCGTGAGCCGCCTCATATGGTGGAGTCGTCTTCCCCGCCGCTGGATCTCAACTTGTCCCCCCTCACCACCGGAGGATCTGTCACCAGCTCCGTCCGCTTCCCCTTCCAGCAGCAGTTTCCGGCGACGGCCGCGGCGGTCTTTCCTGCCGCCCTCCCCGGGGTGAACCAGGTGTTTTACCTCGACGCCGTGCTCCGCGCGAGCATGGCGGCGGCTGGACAATATCCCTTCCAAGGAATCGTGTTCGATCAGCGTCGCTCGGCGGCGAGGGAATCCCCGACCGGTGGAGTCCAAAGCGACTCCGATTCGTCGACGGTGATCGATCTGAACCCCCTGCAGGAGGAGAAGTGTCCTCGGAAGGAGTTGGATCTGGATCTCAACCAACCTCCACTAGAAGAAATATAA 792 0.5808 MNGVEVDYVHFMSVPTSFSLSPTLEFAMGTEKPAAVKSNAHAALKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPLSSHNLNLSHTSPAQSSTVESSSRDREPPHMVESSSPPLDLNLSPLTTGGSVTSSVRFPFQQQFPATAAAVFPAALPGVNQVFYLDAVLRASMAAAGQYPFQGIVFDQRRSAARESPTGGVQSDSDSSTVIDLNPLQEEKCPRKELDLDLNQPPLEEI 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2193 263 CDD AP2 48 107 IPR001471 GO:0003700|GO:0006355
Sto13g2193 263 MobiDBLite consensus disorder prediction 242 256 - -
Sto13g2193 263 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Sto13g2193 263 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Sto13g2193 263 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 31 247 - -
Sto13g2193 263 SUPERFAMILY DNA-binding domain 48 107 IPR016177 GO:0003677
Sto13g2193 263 MobiDBLite consensus disorder prediction 106 151 - -
Sto13g2193 263 Gene3D AP2/ERF domain 47 107 IPR036955 GO:0003700|GO:0006355
Sto13g2193 263 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 31 247 - -
Sto13g2193 263 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Sto13g2193 263 MobiDBLite consensus disorder prediction 220 239 - -
Sto13g2193 263 MobiDBLite consensus disorder prediction 106 127 - -
Sto13g2193 263 MobiDBLite consensus disorder prediction 217 263 - -
Sto13g2193 263 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Sto13g2193 263 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2193 Sto-Chr13 28820348 28823362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2193 28 148 AP2-EREBP Transcription Factor Family AT3G15210 57.576 1.48e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto13g2193 AP2 4.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2193 K09286 - jre:108983254 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2193 13 28820348 28823362 Sto13g2193 13 28820348 28823362 ECH
Sto7g0229 7 1637458 1639289 Sto13g2193 13 28820348 28823362 ECH
Sto4g2831 4 29105253 29106425 Sto13g2193 13 28820348 28823362 ECH
Sto12g0667 12 4219122 4219784 Sto13g2193 13 28820348 28823362 ECH