Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2184 ATGGAAGCCGATGCTGTTTCGGAGGGCGAAGATAATCAGAAGAGGGAACCCGCTGATGATTACAATGACAACAGCTCAAGCAAACTTGTTAATTCCAATGAAGGGCAAAGCAAGCCCAAGCGCCAGATGAAGACCCCTTTCCAGCTTGAATCCCTGGAGAAAGCTTATGCTTTGGAGACGTACCCATCCGAGGCCATGAGGGCGGAGCTGTCGGAGAAGTTGGGGTTGTCGGATCGGCAATTGCAGATGTGGTTCTGCCATAGGAGGCTGAAGGACAAGAAGGAGATGCCGCCAAAGGAGTTGCCGCAGAAGAAGCCGTCGCGGAAGGCTGTGGCGCCGATGCCAGATTCCCCAACGGATGAACTGAGGATGGGGACTGAACTGGCCAATGATTATGGATCCGGTTCGGGTTCGGGTTCAAGCCCGTTTGCTCGTTCAGACTTGCGGAATGTAGTATCTCGGGGTGTGCCGGGATACTATGAGTCACAGCAGTCTATAATGGAGCGTAGAGCAGTTGCTTGTGTTGAGGCACAGTTAGGAGAGCCTCTGAGGGAGGATGGACCCATTCTAGGAATTGAGTTTGATCCATTACCACCGGATGCATTTGGGGCACCTATAGCAGTTACTGAGCAGCAGAAGCGGCCTAATCTTGGCTTTGATGGTAAAGTCTATGAAAGACATGATGTTAGATCAAATAAGGTTATGACAAGGGCTTTCCATGAATATCCATTTCTTCCAAACCACTCCAGTATTAGGTCTGATGCTTATGGACAATTGGCCCAGTCTCATTTACATGATCCAATGGATGTTCCTACTAGAGCTCCATCTTTAGTGGTAAAAAATGAACAGCTACCCAGAGTCCATGCCGCCCAAGGTCATTCTTCACGAGTTCGGCTTTCATCTCAACAAGTGAAGCAAGAGATTTCCTATTCATCACCCCTTCGGGATGATGATGCTGCCCCCCCAAGGGAATCTTACACAAACATAAATATTGGAATGAACTCTCACTTCAGTGATCACCCAATTGTTGCCCCAGAAAATCCTTTTGCTTTACCTGGTGGACCAGCTTTCCATAGCGATGCAGTGTTGCGGGTGGATAGGAAACGCAAGAGTGATGATTCTAGAACTGCAAGAGAAGTTGAAGCCCATGAGATGAGGATCCGGAAAGAGCTTGAGAAACAAGATAACCTTAGGAGAAAGAGTGAAGAACGAATGAGGAAAGAAATGGAGAGGCAAGATCgtgaaagaaagaaggaagaagagaggTTGATGCGAGAGAgacaaagagaagaagaaagaacaaAGCGTGAGCAAAAACGTGAAATTGAGCGAAGGGAAAAGTTTctgataaaagaaaatttaagaGCTGAGAAAAGGAGGCAAAAAGAAGAGCTTCGCAAAGAGAAAGAAGCAGAGAGAAGGAAAGCGGCCCTTGAAAAGGCAGTTGCTCGCAGAATAGCTAAAGAATCTATGGAGCTTATTGAGGATGAACAACTGGAATTGATGGAGTTGGCTGTGGCAAGCAAGGGACTTTCCTCAATTATAAACCTTGATCTTGACACTTTGCAGAATCTTGATATGTTTCGGGATTCGTTGTGTGTTTTTCCACCTCAGTGTGTAAAGCTGAAAAGACCATTTGCGATCCAACCCTGGATCAAATCAGAGGAGAATGTTGGCAACCTTTTCATGGTTAGTGCCTTTGTCTACCTGTATAAATCAGTTAAGGTTAATGACTTTAACTGTGCATTTATATTTGACATCAGTCATGTTTGGAGATTTTTGATTACTTTTGCAGATGTGCTTGAGTTATGGCCGTTTACTCTCGATGAGTTTTTGCAGGCATTTCATGACTATGATTCAAGATTGTTGGGTGAGATACATGTTGCTCTTCTGAAGGTGATAATAAAAGACATTGAAGATGTTGCAAGGACACCTACCGGATTGGGTATGAACCAGAATGGTGCTGCTAATTCTGGGGGTGGCCATCCAGAGATTGTGGAAGGGGCATATGCATGGGGTTTTGACATACGAAATTGGCAAAAGCACTTGAATCAATCGACATGGCCAGAAATTTTTCGACAATTAGCATTGTCTGCAGGATTTGGACCacagttgaagaaaagaagtgtCACTTGGTCATATGCAAATGATAAAGATGAgGGTAGAAGCTGTGAAGACATCATCTCCACACTTCGCAATGGTTCAGCAGCTGAAAATGCTGTGGCAAAGATGCAAGAGAAAGGTCTTTTAGCCCCTCGGAGATCTAGGCACCGGTTGACTCCTGGAACAGTTAAATTTGCAGCGTTTCATGTTCTGTCACTTGAGGGCAGCAAGGGGTTGACAGTACTAGAACTTGCGGAGAAAATTCAGAAATCTGGACTTCGGGACTTGACGACAAGCAAGACGCCTGAGGCATCAATTTCTGTTGCTTTGACTAGAGATGCTAAGCTATTTGAAAGAATAGCTCCATCAACATATCGTGTACGGGCTGCATATAGAAAGGATCCTGCTGATGCAGATGCCATTCTTTCTGATGCTAGaaagaaaattcaaatatttgaaaatgGGTTTCTGGCTGTTGAAGATGCTGATGATgttgaaagagaagaagagtcGGAAAGTGATGAAGTTGATGAGGATCCTGAAGTTGACGATTTAGTAAATCCTTCAAATGATACCAAAGCCTCTGAACAGTATGATGACATGAACAATGGCCCTACACATGGAAATGAAAGTTTGAGTCAAGACATAGAACTTATTCAAAATGAGTTTGATAAGGATCTGCCATGTGTTCCTGTGAATGGTTCCAAGGATGCTGATTGTCCTAGTACTGTCATTGTACAACCTGTTGCTGCTGAAGATCTGAATGCTGGAGGTCTTAATGAAGAAAATATGGAAATTGATGAAAGCAAGTCTGGAGAGTCATGGGTTCAAGGGCTTACAGAAGGGGAATATTCTGATCTCAGTGTAGAAGAACGCCTTAATGCTCTTGTTGCATTAGTTGGTGTGGCAAATGAAGGAAATTCAACACGCCTGGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCTCTGAAGAAGCAAATGTGGGCAGAAGCACAGATAGATAAAATTCGCCAgaaagatgataataataaattagattttcCACCTCTTATTGCGAATAAAGTTGATACACAATATACAGGTCCTGCTGCAGAGGGAAATCAGAGCCCGTTGCtcgatattaatattaataataatgaggCATCACCCAGGACTGCAGAAAACCAAAAAGAAGTTCTGGGTGCACAGAGCATGCCTATTGAAAAGCCCTCAGTAGTGCAGGATCTCTTCACAAGTCCAGATAACCTGCAGAGTCTATCTGCAAATGGTTCAAAAAGGTCTCGTTCACAGTTGAAGTCTTATATTGCCCACATAGCAGAAGAGATGTATGTATATAGGTCCTTGCCCCTTGGTCAAGATCGGAGACGCAACCGTTATTGGCAATTTGTTGCATCTGCTTCTAGCAGTGATCCTGGTTCTGGCAGGGTCTTTGTTGAATTACATGATGGCAATTGGAAGCTTATTGATTCTGAAGAGGACTTTGATTCACTTTTGGCATCACTTGACTCGCGTGGAATCAGGGAATCTCATTTGCGCTTAATGTTGCAGAGAATTGAGAATTCCTTTAAGGAAAATGTTAGAAGGAATGCACAATGTACTAAAATTGCAATGGGAGGggaaatttcaataaaaaatgaagtGGATGAAGTGGATTTCACTCCTGATCGCCGTGCTGGATCTGACAGCTCTAGTAGTTCTCTTTGTGGTCTGAATTCTGATAATACATTGGAAACTTCATCATCCTTTAAAATTGAGCTTGGGAAAAATGAGAGTGAAAAGAAAATTGCTTTGAGAAAGTATCAAGATGTTCAAAAGTGGATATGGAAAGAATGCTATAATTCATCAACATTATGTGCAATGAAGTATGGGAAAAAGAGATGTAAACCACTGGTGGAAATCTGTGATATGTGTTTGAACCCTTATTTCTTTGAAGACTCCCATTGTAATTCTTGCCACCGTACTTTTGCTGCTAACAAtggatttaatttttctaaacaTGCATTTCAATGTCGAGAGAAGTTTGACTTCAAAGATATTTGTATTCTGGATTCTTCTCTTCCCTTACGAACAAGATTGCTTAAGGCCCTGTTGGCTTGTATTGAGGCATCTGTTCCGCTTGAAGCATTTCGATCAATTTGGacagaagagaagaggaagcaCTGGGGTGTTAAGTTGAGCTCAACATCTTCAATTGATGAACTTTTGCAGTTATTGACCATGTTTGAGAGAGCATTACACCGGGACTTTCTCTCATCGAACTTCTCTACGACAGAGGAAATGTTGGGATCCAGCAGTATGCTGGACAGTGATGTAAATGCTTCTGCTGAAATTGAGTCCGTTCCTGTGCTTCCATGGGTACCTCAAACCACTGCAGCTGTGTCTCTGAGAATTTTTGAGTTCGATTCATCCATCAGTTACATAAGGCTTGAGAAATCGGATCCTGCTGAGGAGAAAGAAGTGAAGGAATATGTAAAGCTTCCTTCAAGATATGCTCCCTTCAAATCTGCTAGGGTTATTGAACCAGCAGAATTAGACCATGATGAATTCATTAGAGAAGATAAACCTGCTCATAATAAAATTGTTCGAAGCAGCAATAAACGAGGACGGGGGTATCAAGATCAAGGGCGGGGTAAAAAGTTGTCTAGAAGAACGTATGAGCCAAAACAAAATTCTGGGCGTCGTAATACCAAGGGTAATGAAAATGTGAGTCAAGGATTAAGACAGCCGGGACGATTGACACAAGGACAACCTGGTGGACGTGGTCGCCGAACAGTCAGGAAACGAAGAGTGGAAAAGAGGGCTGTTGAGGATTTGTTGCTCAGCCACACAGGTGTCAGTCACAGTTCCAAGATGAGTAGAGAATCATTGCAAAGTTTGGAAGACGAATGGGATGTTGAAAAGGAGGCAAGTCCTATCCACATGGAGGGTGGTGATAATAGTAACAGTGCTGAGGAAGTGGACTCTGATGACGAAGGGCAAGCGGTGGAATATGAGCAAGGAAACTGGGAGGTGGGTTTCAATGGTGGTAGCTCCAACAGATGGGGTAGGGATTTAGTTGGTGTGAGTGACGAAGAAGTGGTGGGTGCTTCTGAAGATGACAATGGAATTGAAGTGGGAGAGGAGGAGTTGGAGGACTCTGAAGAAGATGTTATTATGAGCGAGGGTGAGGGTGAGGGTTCAGATGGTGTGGCAAATAGAATGATGGTAAATGAAGAAGGCTCAGACTCAGCTGTCTCTGAAGATTCTTCGGATTAG 5358 0.4194 MEADAVSEGEDNQKREPADDYNDNSSSKLVNSNEGQSKPKRQMKTPFQLESLEKAYALETYPSEAMRAELSEKLGLSDRQLQMWFCHRRLKDKKEMPPKELPQKKPSRKAVAPMPDSPTDELRMGTELANDYGSGSGSGSSPFARSDLRNVVSRGVPGYYESQQSIMERRAVACVEAQLGEPLREDGPILGIEFDPLPPDAFGAPIAVTEQQKRPNLGFDGKVYERHDVRSNKVMTRAFHEYPFLPNHSSIRSDAYGQLAQSHLHDPMDVPTRAPSLVVKNEQLPRVHAAQGHSSRVRLSSQQVKQEISYSSPLRDDDAAPPRESYTNINIGMNSHFSDHPIVAPENPFALPGGPAFHSDAVLRVDRKRKSDDSRTAREVEAHEMRIRKELEKQDNLRRKSEERMRKEMERQDRERKKEEERLMRERQREEERTKREQKREIERREKFLIKENLRAEKRRQKEELRKEKEAERRKAALEKAVARRIAKESMELIEDEQLELMELAVASKGLSSIINLDLDTLQNLDMFRDSLCVFPPQCVKLKRPFAIQPWIKSEENVGNLFMVSAFVYLYKSVKVNDFNCAFIFDISHVWRFLITFADVLELWPFTLDEFLQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPTGLGMNQNGAANSGGGHPEIVEGAYAWGFDIRNWQKHLNQSTWPEIFRQLALSAGFGPQLKKRSVTWSYANDKDEGRSCEDIISTLRNGSAAENAVAKMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERIAPSTYRVRAAYRKDPADADAILSDARKKIQIFENGFLAVEDADDVEREEESESDEVDEDPEVDDLVNPSNDTKASEQYDDMNNGPTHGNESLSQDIELIQNEFDKDLPCVPVNGSKDADCPSTVIVQPVAAEDLNAGGLNEENMEIDESKSGESWVQGLTEGEYSDLSVEERLNALVALVGVANEGNSTRLVLEDRLEAANALKKQMWAEAQIDKIRQKDDNNKLDFPPLIANKVDTQYTGPAAEGNQSPLLDININNNEASPRTAENQKEVLGAQSMPIEKPSVVQDLFTSPDNLQSLSANGSKRSRSQLKSYIAHIAEEMYVYRSLPLGQDRRRNRYWQFVASASSSDPGSGRVFVELHDGNWKLIDSEEDFDSLLASLDSRGIRESHLRLMLQRIENSFKENVRRNAQCTKIAMGGEISIKNEVDEVDFTPDRRAGSDSSSSSLCGLNSDNTLETSSSFKIELGKNESEKKIALRKYQDVQKWIWKECYNSSTLCAMKYGKKRCKPLVEICDMCLNPYFFEDSHCNSCHRTFAANNGFNFSKHAFQCREKFDFKDICILDSSLPLRTRLLKALLACIEASVPLEAFRSIWTEEKRKHWGVKLSSTSSIDELLQLLTMFERALHRDFLSSNFSTTEEMLGSSSMLDSDVNASAEIESVPVLPWVPQTTAAVSLRIFEFDSSISYIRLEKSDPAEEKEVKEYVKLPSRYAPFKSARVIEPAELDHDEFIREDKPAHNKIVRSSNKRGRGYQDQGRGKKLSRRTYEPKQNSGRRNTKGNENVSQGLRQPGRLTQGQPGGRGRRTVRKRRVEKRAVEDLLLSHTGVSHSSKMSRESLQSLEDEWDVEKEASPIHMEGGDNSNSAEEVDSDDEGQAVEYEQGNWEVGFNGGSSNRWGRDLVGVSDEEVVGASEDDNGIEVGEEELEDSEEDVIMSEGEGEGSDGVANRMMVNEEGSDSAVSEDSSD 1785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2184 1785 ProSiteProfiles HARE-type HTH domain profile. 762 831 IPR007759 GO:0006355
Sto13g2184 1785 MobiDBLite consensus disorder prediction 861 912 - -
Sto13g2184 1785 Gene3D - 22 96 - -
Sto13g2184 1785 MobiDBLite consensus disorder prediction 863 886 - -
Sto13g2184 1785 Pfam Homeodomain 38 94 IPR001356 GO:0003677
Sto13g2184 1785 MobiDBLite consensus disorder prediction 89 145 - -
Sto13g2184 1785 MobiDBLite consensus disorder prediction 1 48 - -
Sto13g2184 1785 MobiDBLite consensus disorder prediction 1727 1756 - -
Sto13g2184 1785 MobiDBLite consensus disorder prediction 89 106 - -
Sto13g2184 1785 MobiDBLite consensus disorder prediction 1254 1273 - -
Sto13g2184 1785 MobiDBLite consensus disorder prediction 23 44 - -
Sto13g2184 1785 SUPERFAMILY Homeodomain-like 24 94 IPR009057 -
Sto13g2184 1785 MobiDBLite consensus disorder prediction 1655 1674 - -
Sto13g2184 1785 CDD homeodomain 40 96 IPR001356 GO:0003677
Sto13g2184 1785 MobiDBLite consensus disorder prediction 294 310 - -
Sto13g2184 1785 Pfam DDT domain 590 637 IPR018501 -
Sto13g2184 1785 PANTHER HOMEOBOX DOMAIN PROTEIN 7 1785 - -
Sto13g2184 1785 MobiDBLite consensus disorder prediction 889 912 - -
Sto13g2184 1785 MobiDBLite consensus disorder prediction 7 22 - -
Sto13g2184 1785 SMART testlast3 581 640 IPR018501 -
Sto13g2184 1785 MobiDBLite consensus disorder prediction 287 327 - -
Sto13g2184 1785 Coils Coil 380 482 - -
Sto13g2184 1785 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1147 1219 IPR028941 -
Sto13g2184 1785 ProSiteProfiles DDT domain profile. 581 640 IPR018501 -
Sto13g2184 1785 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 972 1011 IPR028942 -
Sto13g2184 1785 SMART HOX_1 37 99 IPR001356 GO:0003677
Sto13g2184 1785 MobiDBLite consensus disorder prediction 1683 1697 - -
Sto13g2184 1785 Pfam HB1, ASXL, restriction endonuclease HTH domain 762 830 IPR007759 GO:0006355
Sto13g2184 1785 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 7 1785 IPR044977 GO:0006357
Sto13g2184 1785 MobiDBLite consensus disorder prediction 131 145 - -
Sto13g2184 1785 MobiDBLite consensus disorder prediction 1258 1273 - -
Sto13g2184 1785 MobiDBLite consensus disorder prediction 1570 1591 - -
Sto13g2184 1785 MobiDBLite consensus disorder prediction 1550 1785 - -
Sto13g2184 1785 MobiDBLite consensus disorder prediction 362 438 - -
Sto13g2184 1785 ProSiteProfiles 'Homeobox' domain profile. 35 95 IPR001356 GO:0003677
Sto13g2184 1785 MobiDBLite consensus disorder prediction 1592 1612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2184 Sto-Chr13 28739173 28748748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2184 7 1708 Homeobox Transcription Factor Family AT1G28420 48.161 0.0 1333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sto13g2184 WSD 1.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2184 - - gmx:100777465 2276.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2184 13 28739173 28748748 Sto13g2184 13 28739173 28748748 CCT
Sto13g2184 13 28739173 28748748 Sto13g2184 13 28739173 28748748 ECH