Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2173 ATGATGGGTTTAATCGATCTCAACACTACAGAGGATGACGGCGAAACGCCGTCATCTGCTTCCTCTGCCTCCTTGTCTTCTCATTCCGGTATAAGCACTTCGGCTTCGGGTTTGGCTCCTCCTTcgtcttcttctgcttctgcttctgtgTGCCTGGAGCTATGGCACGCGTGTGCGGGCCCTATGATCTCCTTGCCCAAGAAAGGAAGCATCGTCGTGTACTCCCCACAGGGCCACTTTGAGCAGCATCTTCAGGATTTTCCCGTCGCTGCTTACAAAATCCCACCCCATGTCTTCTGTCGCGTTCTAGATGTCAAGCTTCATGCGGAGGAAGGTGTCGATGAAGTGTACTGCCAGATCTCGTTGGTTCCTGAAAGCGAGCAAGTTGAGAGGAAATTGCGTGAAGGGGAGATTGATGCTTATGGTGAAGATGAAGATGCTGAAGTTGCAGTGAAGTCTACCACACCTCACATGTTCTGCAAGACACTCACTGCTTCTGATACCAGCACCCATGGTGGCTTCTCTGTGCCTCGTAGAGCAGCTGAAGATTGCTTTCCTCCCCTGGATTACAATCAACAGAGGCCTTCGCAAGAGCTTGTGGCGAAGGATCTGCATGGATTGGAATGGAGGTTCCGGCATATATACAGGGGGCAGCCGCGAAGGCACTTGCTTACGACCGGATGGAGTGCGTTTGTAAACAAGAAGAAGCTTGTTTCTGGAGATGCTGTGCTGTTTCTTAGGGGTGATGATGGAGTGCTGAGATTGGGAATTCGGAGGGCATCTCAGTTGAAAAGTGGTGGTAACTTTTCAGTTCCCTCTAGCCTGCAACTGAATCCTAGCTCAGTCATGGATGTGGTTAATGCTATATCTTCAAGATGTGCCTTTAGTATTTGCTATAGTCCTAGGGTCAGCTCATCAGAGTTCATAATACCCCTCCACAAATTCTTGAAGAGCCTCGATAATTTTTACTCGGTTGGGATGAGATTCAAACTGCGTTTTGAAACTGAAGATGCTGCGGAGCGAAGATGCACTGGATTGATTATTGGAATCAGCGATGTGGATCCCATTCGATGGCCTGGATCGAAATGGAAGTGCCTTATGGTAAGGTGGGATGACATGGAAGCCACTAGGCTCAACCGGGTTTCCCCATGGGAAATTGAGCCATCTGGTTCTGCTTCCACTTCCAATAACTTCAATGCAACTGGTTTGAAGAGGACCAGAATCAGCTTACCTTCAAAGATGGAGTTTCCAATTCCCAATGGGATTGGAGCATCAGACTTTGGGGAATCATTGAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATCTTGGGTGTTAATACTCGTTACGACGGTATTAATTCTCAGAGTCATCATCATCCTTTAACTGAAATAAGGAGGTGCTATCCTAGTTCATCAAACTGTTCTGGGATTATTGCAACAACAGGAAATAATAGCCTCAGAATCCCACCGCAAGTGAATTCTGATGTTTCCTGCAACGGCATAGGCTTTAGCGAATCTTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCTAGCCAACCATACGGAAGATCCATGTCTGTCAACGAGGCTCGTGGAAATGGTCGCTATGGAATCTTCGATGGCTGTCAGATGATGCGCCTGCACCCCTGTGTTCCACCACCTGGGCAAGCATCATCTCCATCATCCGTACTAATGTTCCAACAAGTAGTCAATCCAGTGTCAAACTGTGAGGGTAGAATCCATCATGTTTCTGAAATCAAAGGTGGAAACTTTGCATCAGCCTCATCCTATGAGCAGCAGCTGCCACAAGGAACAAAGTCCCATAATCAAGAGATGGATTCGTCGTATAAACGAAGTTGCAGACTTTTCGGGTTTTCGTTGACACCCGAAAGTCACATTGCGAATGAAGAGGCTAACCCTAACCCCGGAGATGAGTTCCATGGAAGGCATTCGCTGAGGAGCAGGGTGGTTGGAGGCAACAACTATACCAAATGCACTCGTGTTTAA 2016 0.4697 MMGLIDLNTTEDDGETPSSASSASLSSHSGISTSASGLAPPSSSSASASVCLELWHACAGPMISLPKKGSIVVYSPQGHFEQHLQDFPVAAYKIPPHVFCRVLDVKLHAEEGVDEVYCQISLVPESEQVERKLREGEIDAYGEDEDAEVAVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGVLRLGIRRASQLKSGGNFSVPSSLQLNPSSVMDVVNAISSRCAFSICYSPRVSSSEFIIPLHKFLKSLDNFYSVGMRFKLRFETEDAAERRCTGLIIGISDVDPIRWPGSKWKCLMVRWDDMEATRLNRVSPWEIEPSGSASTSNNFNATGLKRTRISLPSKMEFPIPNGIGASDFGESLRFQKVLQGQEILGVNTRYDGINSQSHHHPLTEIRRCYPSSSNCSGIIATTGNNSLRIPPQVNSDVSCNGIGFSESFRFQKVLQGQEILPSQPYGRSMSVNEARGNGRYGIFDGCQMMRLHPCVPPPGQASSPSSVLMFQQVVNPVSNCEGRIHHVSEIKGGNFASASSYEQQLPQGTKSHNQEMDSSYKRSCRLFGFSLTPESHIANEEANPNPGDEFHGRHSLRSRVVGGNNYTKCTRV 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2173 671 SMART B3_2 159 261 IPR003340 GO:0003677
Sto13g2173 671 PANTHER AUXIN RESPONSE FACTOR 41 603 - -
Sto13g2173 671 PANTHER AUXIN RESPONSE FACTOR 608 644 - -
Sto13g2173 671 Gene3D - 157 261 IPR015300 -
Sto13g2173 671 ProSiteProfiles B3 DNA-binding domain profile. 159 261 IPR003340 GO:0003677
Sto13g2173 671 CDD B3_DNA 157 259 IPR003340 GO:0003677
Sto13g2173 671 Pfam Auxin response factor 286 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sto13g2173 671 Pfam B3 DNA binding domain 159 260 IPR003340 GO:0003677
Sto13g2173 671 Gene3D - 323 396 - -
Sto13g2173 671 SUPERFAMILY DNA-binding pseudobarrel domain 152 272 IPR015300 -
Sto13g2173 671 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 41 603 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto13g2173 671 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 608 644 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto13g2173 671 MobiDBLite consensus disorder prediction 1 39 - -
Sto13g2173 671 MobiDBLite consensus disorder prediction 11 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2173 Sto-Chr13 28617966 28622146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2173 158 521 B3 DNA Binding Superfamily AT2G33860 59.511 2.72e-140 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sto13g2173 B3 1.1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2173 K14486 - gmx:100789906 917.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2173 13 28617966 28622146 Sto13g2173 13 28617966 28622146 ECH