Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2160 ATGGGTAGCAAGGGAGGAAACGATATGTTTGAAGGTCAAGCTCAATTGTATAGAGTCTTGATGAACTTTGTGAGTTCAATGGGTCTGAAAGCTGCAATTGAGCTTCGCATAGCAGACATAATTCAAACCCATGGCCAACCCATTACTTTGTCTGAGCTGCTTTCAGCTCTTCAAATAGATCCTGTCAGATCTTCCTTTCTTTATAGGCTAATGCGCTTGTTGGCTCATGATGGCCTTTTTGAGAAATCCAAAgtaaaaggagaagaagcctaTGACCTCACACCTTGCTCTAGGCTTCTCCTAAAGAATCACGTGCCAAGCCTGATTTCACTTGTTCAGCTCATGTTTGATCCTGCTCTCACACAGCCATATCAAGTGTTGGGAGAGTGGCTCCTCAGGAAAGATGACGTCAGGGTGACTCATTTCGAGGCTGTGTTTGGGAAGGGGTTCTGGGAGTATGGGAGTGAGAATCCCGAGTTTGCTAAACTTTTCAATGAATCCATGGGTAGTGATTCTGAGATGATGAACTTGGTGCTTGAGGATTGCAAACATGTTTTTGAAGGTGTGAACTCGTTGGTTGATGGTGGAGGTGGTGTGGGGGAAACTGCTAGGATCATTTCAAACCAATTTCCAAACATTAAATGCACAGTGGTTGATCTTCCACATGTTGTTTCGGGTTTGCAAGATtctgaaaatgtcaaatttcttGGGGGTGATATGCGTCAACATATTCCTTCCGCTGACGTCATTCTTTTCAAGAATGTTCTACATACTTTCAATGATGAAGACTGCGTGGAGATACTAAAAAAATCTAGAAAGGCAATTTCAGGAAAAGGCAAAGACGGAAAAGTTGTACTAATTGATGTTGTGATTAATGAGAAGAAGGACACCTATGAACTCACTAAAACAAAAATCTATTTTGATTTATTGATGATGGTTTTAACACCCGGAAGAgacagagaagaaaaagaatgggACAAGATCTTTAAAGAAGCTGGATTCTCTCATTACGATATTGCACATTTTGGTGTTAGGTCTCTACTTCAAGTTTATCCTTAA 1059 0.3881 MGSKGGNDMFEGQAQLYRVLMNFVSSMGLKAAIELRIADIIQTHGQPITLSELLSALQIDPVRSSFLYRLMRLLAHDGLFEKSKVKGEEAYDLTPCSRLLLKNHVPSLISLVQLMFDPALTQPYQVLGEWLLRKDDVRVTHFEAVFGKGFWEYGSENPEFAKLFNESMGSDSEMMNLVLEDCKHVFEGVNSLVDGGGGVGETARIISNQFPNIKCTVVDLPHVVSGLQDSENVKFLGGDMRQHIPSADVILFKNVLHTFNDEDCVEILKKSRKAISGKGKDGKVVLIDVVINEKKDTYELTKTKIYFDLLMMVLTPGRDREEKEWDKIFKEAGFSHYDIAHFGVRSLLQVYP 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2160 352 PANTHER O-METHYLTRANSFERASE 5 352 IPR016461 GO:0008168
Sto13g2160 352 Pfam O-methyltransferase domain 126 335 IPR001077 GO:0008171
Sto13g2160 352 Gene3D - 2 100 IPR036388 -
Sto13g2160 352 SUPERFAMILY "Winged helix" DNA-binding domain 7 104 IPR036390 -
Sto13g2160 352 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 107 341 IPR029063 -
Sto13g2160 352 PIRSF O-mtase 2 352 IPR016461 GO:0008168
Sto13g2160 352 Gene3D Vaccinia Virus protein VP39 102 352 IPR029063 -
Sto13g2160 352 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 352 IPR016461 GO:0008168
Sto13g2160 352 PANTHER ASMT2 5 352 - -
Sto13g2160 352 Pfam Dimerisation domain 27 75 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2160 Sto-Chr13 28516669 28518294 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2160 24 345 Monolignol Biosynthesis Gene Families AT5G54160 32.934 8.28e-48 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2160 K22588 - qsu:112018723 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2160 13 28516669 28518294 Sto13g2160 13 28516669 28518294 ECH