Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2145 ATGGCTTTAGCCTCCCAAACAGATCTCCCATTCAACGAGAACGACTCACAAGACATGTTCATATACCAAGTCATCCACGAGGCCAATGCTATCCACACCtccaccaccgccaccgccaccaCCTCCTCCTCCGCCGCCGCTGCAGCATTCATCCCGGCGCAGCGACAGCAAACCACCGCACAGACCGGCCTGGAGGCGACGAAGACGGTGGGGAAGAAGCACTACCGAGGCGTGAGGCGGCGGCCGTGGGGGAAATACGCGGCGGAGATACGCGACTCGGCGCGGCACGGAGCGCGCGTGTGGCTGGGCACGTTCGAGACGGCGGAAGAAGCGGCCATGGCTTATGATCGAGCCGCTTTCAAAATGAGAGGAGCCAAGGCTCTGCTGAATTTCCCGGCGGAAATTGTTGGTTCTTCTATGGAGTTTTCTTGTGTGAGacccaataataataatcaggATTCGGATTCCAGTGGTGCTAGCACCACTACTAGTTTGGGGTTCTCGGAAAGTACAAGTAGCACAGGTCGCGGTGGTTCGGCCGGAAACAAGTTCCGGATGTCACTGGGTCTTCCGGTGGCGGCGACGGTGAACTGCGCCGATAACACCGGAGCTAAGAATCTTTACATTATTTCGGTGAAGGGAATCAAGGGTCGCCTGAACCGTTTGCCGTCGGCTTGCGTCGGTGACATGGTCATGGCCACCGTGAAGAAAGGGAAGCCTGATCTGAGGAAGAAGGTCTTACCCGCTGTGATCGTCCGCCAGCGCAAGCCATGGCGCAGAAAGGACGGTGTTTACATGTACTTCGAAGATAATGCTGGTGTCATTGTGAATCCCAAGGGCGAAATGAAAGGTTCTGCTATCACTGGTCCAATTGGTAAGGAGTGTGCAGATTTGTGGCCAAGGATTGCAAGTGCAGCAAATGCTATTGTTTGA 933 0.5295 MALASQTDLPFNENDSQDMFIYQVIHEANAIHTSTTATATTSSSAAAAAFIPAQRQQTTAQTGLEATKTVGKKHYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAAMAYDRAAFKMRGAKALLNFPAEIVGSSMEFSCVRPNNNNQDSDSSGASTTTSLGFSESTSSTGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2145 310 CDD AP2 73 133 IPR001471 GO:0003700|GO:0006355
Sto13g2145 310 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
Sto13g2145 310 Gene3D AP2/ERF domain 73 134 IPR036955 GO:0003700|GO:0006355
Sto13g2145 310 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
Sto13g2145 310 Gene3D Ribosomal protein L14 171 310 IPR036853 GO:0003735|GO:0005840|GO:0006412
Sto13g2145 310 SMART Ribosomal_L14_2 189 310 IPR000218 GO:0003735|GO:0005840|GO:0006412
Sto13g2145 310 SUPERFAMILY Ribosomal protein L14 181 310 IPR036853 GO:0003735|GO:0005840|GO:0006412
Sto13g2145 310 SUPERFAMILY DNA-binding domain 74 134 IPR016177 GO:0003677
Sto13g2145 310 MobiDBLite consensus disorder prediction 147 180 - -
Sto13g2145 310 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Sto13g2145 310 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Sto13g2145 310 Pfam Ribosomal protein L14p/L23e 192 310 IPR000218 GO:0003735|GO:0005840|GO:0006412
Sto13g2145 310 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Sto13g2145 310 ProSitePatterns Ribosomal protein L14 signature. 249 275 IPR019972 -
Sto13g2145 310 PANTHER 60S RIBOSOMAL PROTEIN L23 175 310 - -
Sto13g2145 310 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 175 310 IPR000218 GO:0003735|GO:0005840|GO:0006412
Sto13g2145 310 Hamap 50S ribosomal protein L14 [rplN]. 189 310 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2145 Sto-Chr13 28399234 28405128 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2145 172 310 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 96.403 6.03e-97 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto13g2145 Ribosomal_L14 2.8e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2145 13 28399234 28405128 Sto13g2145 13 28399234 28405128 ECH