Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2143 ATGGTAGAGAAAGAAATGGCGAGAAAAAGGGGAAGAGGAGCCGAAGCATCGGCGCATTCCGAAGCATCGGAACGCCTAAAAGCTCGACTCCGTGGCGGTCGCCGTTCAGATGCCGATGGATACCAAATTAAGTTGGAAAACCCTATTTATGATACGCTCACTGAGGATGAGTACAATGCTCTCGTCGCCAAGCGCCGCCGCGAACAATCCCGAGATTTCATCGTTGAGGACGACGGTCTTGGGTACGGGGACGaagcagaggaggaggaggaggattgGTCAAACGCTGGGTTCGCTCTCTCATCCGATGGATCTGGCGGAGAATCCAAAAGGAAGAAAGTAGAAAAGAAAGATCCGCAACCTAAAACGTCGTCGGTTTTTAAGAAAAGCAGGGATGGTAAGGCTAAAGGATTTTCCTGTGATAGTATCGTCGATGGTTGTGCCGCCTTGGGTTCTGAGCAAAACTACGGAGGAGTAAGAGAAGAGGCATCGGCTAAAGAATCAGAAGGAGGAGAAGGTTTTAATTCTGATCCAACTAACAGAAATATTGTGGTTGGGGAGAAAATTATGCCAAAGGATACTAAAATAGAAGCTAAGCCAACAGGGGAGAAGAAGGTCTTTACACTCAATGCAAAAGTTAAAGATGATTCAAAGGTGGCCAATGAAGCTCTAAATATTGGAAAGAACTTGGAGCTTAATCAAGATGGCTCGCTGTCTTTCTACATACTTGATGCTCATGAAGAGTTCTATGGACCTAATATGGGCGACCTATATTTGTTTGGGAAGGTCAAAGCAGGTAAATCATATCAGAGTTGCTGTGTTGTTGTAAAGAACATGCAGAGGTGTGTCTATGCTATTCCAAATCATCCTTTACATTGCACTGACGAGATGATGAAGCTTGACAAGGATGTTGAAGAGTCCCGGATTTCATGTACAGAACGTCATAAAAAGCGGCAAGATATGGTATTTGGTTTAAAGAATGAGATAGCAAAACAACTAAGTCTGAACGTTTCAACCTTTAGCATGGAATCTGTTAAGAGGAAATATGCGTTTGAGCGATCTGAAATACCTGCTGGTGAAAATTATGTGCTGAAAATCAACTATCCATTCAAGGATCCACCCCTTCTAGTGGACCTAAAAGGAGAGAGTTTCTGTGCTCTACTAGGAACGCATCGCAGTGCATTGGAGCTTTTTCTtattaaaagaaagataaagggaCCTTCTTGGCTACTGCTTTCAAACTTTTCTACTCGCTTGGCTTCTCAAAGGGTTAGCTGGTGCAAATTCGAAGTGATTGTTGAGTCTCCTAAAGACATAAGTATATCAAAGTCCAGTGTTGAGATTCCTCCTGTGGTTGCCACAGCTGTAAATTTGAAAACCaccataaatgaaaaaaaaagcaaaaatgagGTTGTCTCTGCATCCATTGTTTGCTGCCGCGAGGTCAAGATTGACACTCCCACGTTGGCTTCAGAATGGAAGAGACCTGGAATGCTGACCCATTTTACTGTTGTTCGTGAACTTGATGGAGGCCCATTGGGCTTTGAAAAGGAGGTCACGGACCGCAACACAAGATCTGGCTCAAATGTTCTCTGTTATGAAAGAAGTGAAAGGGCTTTGCTAAACCGCCTGATCATAGAATTACATAAATTGGATAGTGATGTTCTTGTTGGACATAACATTTCCGGATTTGACCTGGATGTTCTTCTCCACAGATGCCAGATCTGGATAAGAAAGGCTCTTTGTAGGTTCAATAAAACCTACCAATACATAGGTCCTGGAGAACTTACTGAGTGGATCTTGGGTGGTCATCTCTGTGCTCTTGTGAGGTGGGTCCTGAGGTTTGACTCCGGTGAGCCTTTGCACCTAACACTCCTGAAAAGTTTAATGCAGGCTCTCGAAGTGCCAATCAGCACGTGGTCCAAAATAGGCCGCCTTAACAGGTCTATTGTGCCTAAACTTTCAAGAGTAAGCTCTGTTTCTGGTTCTGGAGTTACTCCTAGGATCATGTCTTGTGTTGCTGGTCGGCTTCTTTGTGATACATACTTGTGTGCTCGTGACCTACTAAAGGAGGTTAGCTACTCGTTAACTCAACTTGCAAATACCCAGCTGAACAAAGTTCGAAAGGAAGTTGCTCCAAATGATGTTTCAAAAATGTTCCAATCAGCAGAATCCCTTATGGAACTTATTGAATATGGTGAGACAGATGCATGGTTGTCTATGGAACTCATGTTTCATTTGAGTGTTCTCCCCCTCACACTTCAGCTGACTAATATTAGTGGTAATTTGTGGGGGAAAACTCTTCAGGGTGCAAGAGCACAGAGGGTGGAGTATCTTTTGTTGCATGCATtccataaaaagaaatatattgtGCCAGACAAGATTCCTTCCCACACAAAAGATACAAAATTGACGAAACGCAGAGTAACTCGTGGTGTTGATGATGGCAACCTTGATGAAGCAGATATTGATAATACAAACTATGACAACGATGTTCCTGATAGTGAtcacaagaaaaacaaaaagggtCCATCCTATGCTGGAGGTCTGGTTTTGGAGCCAAAGAAGGGTTTATATGACAAATATATATTGCTTCTGGACTTCAATAGTCTTTATCCCTCTATCATTCAGTTTCTAGATTTCTGTGTATCTTACTTAGCTATTGTACAGGAATACAATATCTGCTTCACAACCGTAGAAAGATCTTCAGATGGATCTTTTCCTCGTCTTCCATCTAGTAAAACAACTGGAGTTTTGCCAGAGGTGCTGAAAGATTTGGTTGATAGAAGGAGAAGGGTAAAGGAATCGATGAAGGGATTTGATGAGTGTTTACTGCAACTGGACATTCGGCAACAAGCATTAAAGCTTACTGCAAACAGTGTGTACGGATGCCTAGGGTTTTCCAATTCAAGATTTTATGCAAAGCCACTAGCAGAGCTTATAACCCTGCAAGGAAGGGAGATACTACAGAGCACCGTTGATCTAGTTCAGAATAACTTGAACTTAGAGGTTAATCTTGTGCATTGCTTCTTCAAGTTATTGTTGCAGGGTGTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGATATTGAGAAAGCAAAAGCAATCGCTGGAAAAGTTATTAAAGAGGTCAACAAGAAATATAGATGCTTGAAAATTGATTTAGATGGTTTGTACAAAAGAATGCTACtacttaagaaaaagaaatacgCAGCTGTCAAGGTGCAATTCAAAGATCGCACGCCATACGAGGTTATTGAACGTAAAGGTCTTGATATTGTTCGTCGTGACTGGAGCCCATTATCTAAAGATATTGGAGATTTTTGCCTAAATCAAATTTTGTCAGGAGGGTCATGTGAGGATGTTGTTGAATCAATTCACAGCTGCCTCCGGAAGGTGCAAGAAGAGATGAGGAGTGGAGAGGTACCGCTAGAGAAATATATCATCACTAAAACATTGACTAAACCTCCTGAAGCCTATCCAGCTGCCAAAAATCAACCGCATGTTCTTGTGGCACAAAGATTGAAGCAAAAGGGTTACTCCACTGGTTGCTCTGCCGGTGATACAATCCCCTATATAATTTGCTGCGAGCAGGGCAGTAGTTCAGGCAGTGCAACGGGCATTGCTCAGCGTGCTAGATATCCTGAGGAACTGAAACAAGAACAAGGGCAATGGATGATTGACATTGACTACTACTTGTCACAACAGATTCATCCTGTTGTATCGCGTCTTTGCGCATCCATTCAGGGAACGAGCCCTGCAAGACTGGCTGATTGTTTAGGGCTTGATGCATCAAAATTTCAACATAAATCAAGTGAAGCCTTCAGTGGTGATCCTTCAAGCTCACTCTTCTTCGCAGCTCATGACGAGAAGAGGTATCATGGATGTGAGCCGTTGGTCTTGTCATGTCCTAGCTGCTCTGCTACTTTTGACTGCCCATCTATCTTCAAATCTATTTGTTCCTTCAGAAGTGAAAAGCCAACAAGCTCAGGAATAGACTTAAACCATGATTTCTGGCATAAGCTGCGCTGTCCCAAATGCCCAGAAGAAGATGGCTTAGGCAGAATTTCTCCTGCAATGATAGCCAATCAGGTTAAAAGGCAAGCAGATAAGTTTGTTTCAATGTACTACAAAGGCTTATTAATGTGTGATGATGAAACATGCAATTTTGCAACACTAAGTATTAACCTTCGTCTGGTTGGTGATGCCGAAAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGACACCTTCAAAAAAAGTACACAGAGGCAGACTTGTATAAACAACTCTCatatttttgccacgtgttggATACCGTTTCCTATGTAGAAAAGTTGGAGGCAAAATCTAGGATATCAGTAGAGAAAGAGTTGGCCAAAATTAGAGCAATGGTTGATCTGGCATCATCAACAGTACAAAAGATTCGGGACCGTTGTTCCTACGGTTGGGTGCAACTGCGGGATTTAGTCATTACtgtatga 4503 0.4119 MVEKEMARKRGRGAEASAHSEASERLKARLRGGRRSDADGYQIKLENPIYDTLTEDEYNALVAKRRREQSRDFIVEDDGLGYGDEAEEEEEDWSNAGFALSSDGSGGESKRKKVEKKDPQPKTSSVFKKSRDGKAKGFSCDSIVDGCAALGSEQNYGGVREEASAKESEGGEGFNSDPTNRNIVVGEKIMPKDTKIEAKPTGEKKVFTLNAKVKDDSKVANEALNIGKNLELNQDGSLSFYILDAHEEFYGPNMGDLYLFGKVKAGKSYQSCCVVVKNMQRCVYAIPNHPLHCTDEMMKLDKDVEESRISCTERHKKRQDMVFGLKNEIAKQLSLNVSTFSMESVKRKYAFERSEIPAGENYVLKINYPFKDPPLLVDLKGESFCALLGTHRSALELFLIKRKIKGPSWLLLSNFSTRLASQRVSWCKFEVIVESPKDISISKSSVEIPPVVATAVNLKTTINEKKSKNEVVSASIVCCREVKIDTPTLASEWKRPGMLTHFTVVRELDGGPLGFEKEVTDRNTRSGSNVLCYERSERALLNRLIIELHKLDSDVLVGHNISGFDLDVLLHRCQIWIRKALCRFNKTYQYIGPGELTEWILGGHLCALVRWVLRFDSGEPLHLTLLKSLMQALEVPISTWSKIGRLNRSIVPKLSRVSSVSGSGVTPRIMSCVAGRLLCDTYLCARDLLKEVSYSLTQLANTQLNKVRKEVAPNDVSKMFQSAESLMELIEYGETDAWLSMELMFHLSVLPLTLQLTNISGNLWGKTLQGARAQRVEYLLLHAFHKKKYIVPDKIPSHTKDTKLTKRRVTRGVDDGNLDEADIDNTNYDNDVPDSDHKKNKKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQFLDFCVSYLAIVQEYNICFTTVERSSDGSFPRLPSSKTTGVLPEVLKDLVDRRRRVKESMKGFDECLLQLDIRQQALKLTANSVYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVNLVHCFFKLLLQGVIYGDTDSIMIYSGLDDIEKAKAIAGKVIKEVNKKYRCLKIDLDGLYKRMLLLKKKKYAAVKVQFKDRTPYEVIERKGLDIVRRDWSPLSKDIGDFCLNQILSGGSCEDVVESIHSCLRKVQEEMRSGEVPLEKYIITKTLTKPPEAYPAAKNQPHVLVAQRLKQKGYSTGCSAGDTIPYIICCEQGSSSGSATGIAQRARYPEELKQEQGQWMIDIDYYLSQQIHPVVSRLCASIQGTSPARLADCLGLDASKFQHKSSEAFSGDPSSSLFFAAHDEKRYHGCEPLVLSCPSCSATFDCPSIFKSICSFRSEKPTSSGIDLNHDFWHKLRCPKCPEEDGLGRISPAMIANQVKRQADKFVSMYYKGLLMCDDETCNFATLSINLRLVGDAERGTVCPNYPRCNGHLQKKYTEADLYKQLSYFCHVLDTVSYVEKLEAKSRISVEKELAKIRAMVDLASSTVQKIRDRCSYGWVQLRDLVITV 1500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2143 1500 Pfam DNA polymerase family B, exonuclease domain 268 585 IPR006133 -
Sto13g2143 1500 MobiDBLite consensus disorder prediction 106 136 - -
Sto13g2143 1500 Gene3D Palm domain of DNA polymerase 833 1083 IPR023211 -
Sto13g2143 1500 PANTHER DNA POLYMERASE 632 1498 - -
Sto13g2143 1500 PANTHER DNA POLYMERASE 219 577 - -
Sto13g2143 1500 MobiDBLite consensus disorder prediction 158 181 - -
Sto13g2143 1500 Pfam DNA polymerase alpha subunit p180 N terminal 26 89 IPR024647 -
Sto13g2143 1500 TIGRFAM pol2: DNA polymerase (pol2) 624 1250 - -
Sto13g2143 1500 Gene3D - 240 438 - -
Sto13g2143 1500 Gene3D Helix hairpin bin 915 965 - -
Sto13g2143 1500 MobiDBLite consensus disorder prediction 1 36 - -
Sto13g2143 1500 Gene3D - 1096 1280 IPR042087 -
Sto13g2143 1500 SUPERFAMILY Ribonuclease H-like 234 792 IPR012337 -
Sto13g2143 1500 MobiDBLite consensus disorder prediction 79 94 - -
Sto13g2143 1500 Pfam DNA polymerase family B 763 1252 IPR006134 GO:0000166|GO:0003677
Sto13g2143 1500 CDD DNA_polB_alpha_exo 449 755 - -
Sto13g2143 1500 Pfam DNA Polymerase alpha zinc finger 1293 1496 IPR015088 GO:0003887|GO:0006260
Sto13g2143 1500 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 219 577 - -
Sto13g2143 1500 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 632 1498 - -
Sto13g2143 1500 Gene3D - 621 817 IPR036397 GO:0003676
Sto13g2143 1500 SUPERFAMILY DNA/RNA polymerases 788 1267 IPR043502 -
Sto13g2143 1500 MobiDBLite consensus disorder prediction 815 846 - -
Sto13g2143 1500 Gene3D - 280 405 - -
Sto13g2143 1500 MobiDBLite consensus disorder prediction 72 136 - -
Sto13g2143 1500 CDD POLBc_alpha 839 1268 IPR045846 GO:0003887|GO:1902975
Sto13g2143 1500 SMART polmehr3 449 1032 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sto13g2143 1500 ProSitePatterns DNA polymerase family B signature. 1020 1028 IPR017964 GO:0000166|GO:0003676
Sto13g2143 1500 Gene3D - 449 587 IPR036397 GO:0003676
Sto13g2143 1500 Gene3D DNA Polymerase alpha, zinc finger 1292 1485 IPR038256 -
Sto13g2143 1500 PRINTS DNA-directed DNA-polymerase family B signature 863 876 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sto13g2143 1500 PRINTS DNA-directed DNA-polymerase family B signature 951 963 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sto13g2143 1500 PRINTS DNA-directed DNA-polymerase family B signature 1018 1026 IPR006172 GO:0000166|GO:0003676|GO:0003887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2143 Sto-Chr13 28378349 28390443 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2143 5 1498 Core DNA Replication Machinery Family AT5G67100 54.675 0.0 1599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2143 K02320 - pop:7483107 1820.05