Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2142 ATGGCTATTCAAAGTAATAAACATGAAGCTAATTCTGAAGGCATTCTTGAGAATGTATGGGCCAAAATCATGAGCAGCGATGGAATATCAAAATGGGAAGAAATGCCAAATCTAGATGGAAGAGAAGGGTCTATGGAAGTTCTGAATAGGCTTCCAAGTTTAGGAAGATGGATATCAATGGGAGCTGAGTATTGGGAAGAAATCTTGGGAGATTTTCCACCTTGTAGTAGTGATTCTGCATCCAATAATAAGAAggtagaagaaggagaagatgctGTGAAAATGAGAGCAGAGGaggaggaaaagaagaagaagaagatagttTCAAAACACTACAGAGGAGTTAGGAGAAGGCCATGGGGAAAATATGCAGCAGAAATAAGAGACTCATCTAGGAAAAGTGCTAGAGTTTGGCTTGGGACTTTTGAAACAGCTGAAGAAGCAGCTTTGGCTTATGATAAGGCTGCTTTGAGGATTAGAGGTCCCAAAGCATACCTCAATTTCCCACTTGAGACCGTCTCAAAGGCCTTGGGATTGTTTGATTCTCAAGAAAACTATTGCAACTCCCACAAGAGGGGATCaagggaaagagaagaagaagaagaagaagttggtGGTACTATGATGATGAAGAATGAAGAACctgcaagaaaaaaaatggcTAGCTTGATGGGAGGAATGGTAGGGATTAATGAAGCAGATGATGATGTTGTTGAGTTTCTGGACTTGGGGAGTGATTACTTGGAAAATCTTCTCCTATACTTGAGAGGGTTTGTACGTAAGAGGGAGAAAAAGATAGGAACATGGGTCTCATATGATATGAAGTAG 828 0.3575 MAIQSNKHEANSEGILENVWAKIMSSDGISKWEEMPNLDGREGSMEVLNRLPSLGRWISMGAEYWEEILGDFPPCSSDSASNNKKVEEGEDAVKMRAEEEEKKKKKIVSKHYRGVRRRPWGKYAAEIRDSSRKSARVWLGTFETAEEAALAYDKAALRIRGPKAYLNFPLETVSKALGLFDSQENYCNSHKRGSREREEEEEEVGGTMMMKNEEPARKKMASLMGGMVGINEADDDVVEFLDLGSDYLENLLLYLRGFVRKREKKIGTWVSYDMK 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2142 275 Gene3D AP2/ERF domain 110 171 IPR036955 GO:0003700|GO:0006355
Sto13g2142 275 CDD AP2 110 169 IPR001471 GO:0003700|GO:0006355
Sto13g2142 275 Pfam AP2 domain 111 161 IPR001471 GO:0003700|GO:0006355
Sto13g2142 275 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF091 17 252 - -
Sto13g2142 275 SUPERFAMILY DNA-binding domain 111 171 IPR016177 GO:0003677
Sto13g2142 275 SMART rav1_2 111 175 IPR001471 GO:0003700|GO:0006355
Sto13g2142 275 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 252 - -
Sto13g2142 275 ProSiteProfiles AP2/ERF domain profile. 111 169 IPR001471 GO:0003700|GO:0006355
Sto13g2142 275 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Sto13g2142 275 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2142 Sto-Chr13 28373822 28374858 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2142 15 228 AP2-EREBP Transcription Factor Family AT4G18450 38.261 1.51e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto13g2142 AP2 4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2142 - - lang:109334345 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2142 13 28373822 28374858 Sto13g2142 13 28373822 28374858 ECH