Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2136 ATGGGCTTCGACGACGACGATCACTACGCTCATGAAAAGCTCAGTACGGGCCTCAAGGCCATGCTCGCCGCAGCTTTCTCTCTATTCACCATTCTCATACTCGTCATCGCCTTCCACTGGATCTTGCGCCGCCGCCGGAACCGTCAGCTCCAGAGACGCCTCCACGACCACTTAGTTCACCAGATCGGCTCTCAGATCGCGCCGATCGACGCCGACGAGGATCCGCGATTCCCGGCGAatcatcaccaccaccagcGTAAAGGCCTGGAGGCTTCGGTGATAGCGTCGCTGCCGAAAGTGTCGTACAAGGAGACGGAGCGGTTCGGGCGGGCGGAGTCGTCGATGGAGTGCTCGGTTTGTTTGGTGACGATTGGGGAGGACGCGACGGTTAGGGTTCTGCCGAACTGTAAGCACTTGTTCCATGTGGATTGTGTGGACAAGTGGTTCGGGTCGAATACTACTTGTCCGATTTGCCGGACCCAGGCTGAGCCCAAGGTGGGTGCGGTTCGGCCCACGGCTCCACCAGAAGAAGAAGGTAGTGATGTTAATAGTGATGGGTTGGGTTTGAGAGTGACGTCTTTCCGTAGTATGATTGATAGCTGTGATGGATGGTTGAGACATCTCCAAATCCCATAA 636 0.5472 MGFDDDDHYAHEKLSTGLKAMLAAAFSLFTILILVIAFHWILRRRRNRQLQRRLHDHLVHQIGSQIAPIDADEDPRFPANHHHHQRKGLEASVIASLPKVSYKETERFGRAESSMECSVCLVTIGEDATVRVLPNCKHLFHVDCVDKWFGSNTTCPICRTQAEPKVGAVRPTAPPEEEGSDVNSDGLGLRVTSFRSMIDSCDGWLRHLQIP 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2136 211 PANTHER RING FINGER DOMAIN-CONTAINING 1 170 - -
Sto13g2136 211 SUPERFAMILY RING/U-box 111 166 - -
Sto13g2136 211 CDD RING-H2_PA-TM-RING 116 159 - -
Sto13g2136 211 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 1 170 - -
Sto13g2136 211 SMART ring_2 117 158 IPR001841 -
Sto13g2136 211 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Sto13g2136 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 165 IPR013083 -
Sto13g2136 211 Pfam Ring finger domain 116 159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2136 Sto-Chr13 28303078 28304112 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2136 3 184 C3H Transcription Factor Family AT2G42360 37.566 5.74e-27 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2136 K19038 - gmx:100786701 182.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2136 13 28303078 28304112 Sto13g2136 13 28303078 28304112 ECH