Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2115 ATGGATTTCTCGAAGAAGCGGAAAACCGAAGAGAATGGAAACGCCGATTCTGAGCTTCCCACCACTGCTACAACCACCCTTAGCCCAGACGACATCCGTAAGATCCTCCAACCCTTCACCCAAGAACAGCTCCTTGAATTGCTTCAATCAGCTGCTCTTCGTCACCCTGACGTTCTTGAGGCTGTTCGTTCCCATGCCGACCGGGATTCCACCCTTCGGAAACTCTTTGTTCGGGGGCTTGCGGGGGAGACCACCACGGAGACACTCAGCAGTGTCTTCTCCTCCTTtggggagcttgatgaggcgaTCGTTATCTTCGACAAAACGACGGGAAAGTCCAAGGGTTACGGCTTCGTGACGTTCAAGCATGTTGATGGTGCTATACTGGCTTTAAAGGTGCCCAGCAAGAAAATTGATGGGAGAATGACGGTGACCCAGCTTGCAGCTGCTGGGTTATCGGGCACAAGTGATGTCTCTGCCAGAAAAATTTTTGTGGGAAATGTGCCGTTTGATATCTCGTCGGAAAGATTGTTGAGTTACTTCTTGGCGTTTGGGGAGATCGAAGAAGGGCCTCTAGGGTTTGACAAAGGAAATGGGAAGTCCAAAGGTTTCGCATTCTTTGTGTACAAAACGGAGGAGGGTGCAAGGGCGTCTCTTGTTGAGCCTGTCAAGACAATTGATGGGCATCAAGTGGTTTGTAAACTGGCCATGGATAACAAAAAGGGAAAGCCTGGAGGAGTTCCGACTCAGGGGCCCCCTGGGTTACCTGTTAATAGCATGGCGGCACAGCAAACGCAGCCATCTTTGCCTGGTCCCATGATGGGATCAAATTATGGAGGTCACGGTCAGGTTCCATCTTCCATGACAACTAATAATGGTGGTGGGTATGGTCCTGGAATTGGAGGGGGGTATAGTGGTTCTCAGTTCAATGGGCCACCTTCTGGTGATTATGGCGCTAGGTTGCCTCCAAGTTCTGCCGGAATGCCTTCCGCGGGATATCCAGTTCCCTCGCAGCATCAACAGCCCATGCAAATGCCAAGATTGGCACCTGGGGGGATGTACCAAGGCATGCCGCCCTACTACTGA 1086 0.5046 MDFSKKRKTEENGNADSELPTTATTTLSPDDIRKILQPFTQEQLLELLQSAALRHPDVLEAVRSHADRDSTLRKLFVRGLAGETTTETLSSVFSSFGELDEAIVIFDKTTGKSKGYGFVTFKHVDGAILALKVPSKKIDGRMTVTQLAAAGLSGTSDVSARKIFVGNVPFDISSERLLSYFLAFGEIEEGPLGFDKGNGKSKGFAFFVYKTEEGARASLVEPVKTIDGHQVVCKLAMDNKKGKPGGVPTQGPPGLPVNSMAAQQTQPSLPGPMMGSNYGGHGQVPSSMTTNNGGGYGPGIGGGYSGSQFNGPPSGDYGARLPPSSAGMPSAGYPVPSQHQQPMQMPRLAPGGMYQGMPPYY 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2115 361 SMART rrm1_1 162 234 IPR000504 GO:0003723
Sto13g2115 361 SMART rrm1_1 74 146 IPR000504 GO:0003723
Sto13g2115 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 150 IPR000504 GO:0003723
Sto13g2115 361 SUPERFAMILY RNA-binding domain, RBD 156 246 IPR035979 GO:0003676
Sto13g2115 361 MobiDBLite consensus disorder prediction 1 25 - -
Sto13g2115 361 CDD RRM_RBM24_RBM38_like 73 148 - -
Sto13g2115 361 Gene3D - 153 254 IPR012677 -
Sto13g2115 361 Gene3D - 30 148 IPR012677 -
Sto13g2115 361 SUPERFAMILY RNA-binding domain, RBD 65 148 IPR035979 GO:0003676
Sto13g2115 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 244 IPR000504 GO:0003723
Sto13g2115 361 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 336 - -
Sto13g2115 361 CDD RRM_RBM24_RBM38_like 161 236 - -
Sto13g2115 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 229 IPR000504 GO:0003723
Sto13g2115 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 141 IPR000504 GO:0003723
Sto13g2115 361 PANTHER GEO13361P1-RELATED 1 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2115 Sto-Chr13 28148947 28150197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2115 147 275 C2H2 Transcription Factor Family AT2G19380 35.606 3.06e-17 81.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2115 13 28148947 28150197 Sto13g2115 13 28148947 28150197 ECH