Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2114 ATGAGCTCCCACGCATCAGACAACCTCGACGTATCGAAACCCAACGGCGTCGTCGTGAAGGTCGAGAATTGCGAGGCTGCGATGGAGAAACAGAGGAGGAGTGAGGAGGATGTGGGAGTGTTGAAAAGGTGTGTGAAGAAGCTTCACTTTGGGAGTTGGGAAGAGAAGGAGGCGACGGCGAGAGAGATTGAGAGGTTGGCCAGAGAAGATGTGAAGGTTAGGAAGTTGATCACGGAGCTCGGAGTAGTGCCGGAGTTGGTGTCCATGGTGGCGTCGGAGGTGGCTGAACGGCGGCGAGCGGCGCTCAAGGCGTTGATTCAACTCACTCATGGAACTTACACGAACAAGGCATTGATAGTGGAGGCAGGAATATTGCTCAAGCTGCCAAAGAGAATTGACCTTGTGGATGAATCAACAAGAAGTGAATGTTCAGAGTTGCTCTTATCTTTGTCATCTCTAGCAAGCACACAATTCCCTCTTCCTTCATCACACTTTCTCCCATTTCTTAGGGACATTCTTGAATCAGAGTCTAGTTTTGACACCAAGCAGTCATGCTTGGGTGCCTTATACAACCTCTCAAGTGTGTTAGAGAATGCAGGACCTTTGGTTTCTAGTGGGATTGTGCCTATTCTCTTGGAATTGTCCTCAGTGAAGGAGATTTCAGAGAAAGCACTTGGGACTCTAGGGAACTTGGTGGtcactttgatggggaaaagagcAATAGAGAATAGCTCAATGGTGCCAGAGAGGTTGATAGAGATTTTGTCATGGGAGGATAAACCAAAATGCCAAGAGCTGTCAGCTTATGTTTTGATGATTCTGGCTCATCAGAGCTCATCACAGAGAGAAAAAATGGCAGAAGCAAAGATTGTTCAGGTGCTTCTTGAAGTGGCTCTTTTGGGAAGCCCTTTAGCTCAGAAGAGAGCACTAAAACTATTGCAATGGTTCAAGGATGAAAGGCAAGTGAAGATAGGGCCACATTCAGGGCCACAAACACCAAGAATGGTAATGGGGTCACCTGTGAATCAAAGGGAAGTAATAGAGGGAAAGAGGACGATGAAGAATTTGGTGAAAGAAAGCTTGCATAGGAATATGGAAGTAATTACTCGGAGAGCCAATCCAGCTGGGAATTCTATTAAGCTTAAGTCTTTGGTTATCAGCACAAGTTCCAAGAGTTTGCCTTACTAG 1188 0.4562 MSSHASDNLDVSKPNGVVVKVENCEAAMEKQRRSEEDVGVLKRCVKKLHFGSWEEKEATAREIERLAREDVKVRKLITELGVVPELVSMVASEVAERRRAALKALIQLTHGTYTNKALIVEAGILLKLPKRIDLVDESTRSECSELLLSLSSLASTQFPLPSSHFLPFLRDILESESSFDTKQSCLGALYNLSSVLENAGPLVSSGIVPILLELSSVKEISEKALGTLGNLVVTLMGKRAIENSSMVPERLIEILSWEDKPKCQELSAYVLMILAHQSSSQREKMAEAKIVQVLLEVALLGSPLAQKRALKLLQWFKDERQVKIGPHSGPQTPRMVMGSPVNQREVIEGKRTMKNLVKESLHRNMEVITRRANPAGNSIKLKSLVISTSSKSLPY 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2114 395 SUPERFAMILY ARM repeat 42 316 IPR016024 -
Sto13g2114 395 Gene3D - 241 350 IPR011989 -
Sto13g2114 395 Gene3D - 38 240 IPR011989 -
Sto13g2114 395 SMART arm_5 153 194 IPR000225 GO:0005515
Sto13g2114 395 SMART arm_5 70 110 IPR000225 GO:0005515
Sto13g2114 395 SMART arm_5 112 152 IPR000225 GO:0005515
Sto13g2114 395 SMART arm_5 195 233 IPR000225 GO:0005515
Sto13g2114 395 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 28 395 - -
Sto13g2114 395 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 28 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2114 Sto-Chr13 28139539 28142878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2114 54 333 U-box Gene Family AT1G67530 28.920 2.82e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2114 - - gmx:100813828 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2114 13 28139539 28142878 Sto13g2114 13 28139539 28142878 ECH