Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2113 ATGGTGTACTGCTCGTATAACTCCAATTTTTCATCTGGGTCTGATATTTCGGGGCTATTCAATCCGACTTCGCATAAAATTGTTGATTCTGATGGGGTTTTACAGAGTGAGTCGGCGTCACCGCATTCGTTAGTTATGAATAGTGGGAAGGGGGAGCTAGAGAATTCCCCTATGAAGATAGGGAAAAAAGGGGTTTCTGCAAAAGCTTTGGCGGCTATGAAGAGCCATAGTGAAGCagaaaggaggagaagggagagAATAAACCGTCATCTTGATACACTTCGTGGTCTTGTGCCCTGCACTGAAAAGATGGATAAAGCAACATTATTGGCTGAAGTTATCAGCCAAGTGAAGGAACTGAAGAAAAATGCAGTGGAAGCTAGTAAAGGTTTCCTTATTCcaatggatgatgatgaagtgaAAGTTGAACCATACAATGATGAAGGGGGAGAAGGATCAATGTCTTGCAGTTATAAAGCATCTGTGTGCTGTGATTACCGATCCGAGCTTCTATCTGACCTGAGACAGGCTCTCAATGGCCTTCAAATTCAATTGATGAGGGCAGAAATATCAACTTTGGGAGGCAGGGTGAAGAATGTATTTGTCTTCACATGCTGCAAAAAAGAACATATTAATATTGAGGCTTGCCAACTTCTTCCAAGCACTGTCCACCAGGCACTAAGTTCTGTACTTGAGAAGGCTTCTAGCTCACTGGAATATTCTCTCGGAATGTCACTTCGAAGCAAGCGCCGACGACTTTGCTTCTTTGAAAATTCTACTCCCTCGTGA 789 0.4081 MVYCSYNSNFSSGSDISGLFNPTSHKIVDSDGVLQSESASPHSLVMNSGKGELENSPMKIGKKGVSAKALAAMKSHSEAERRRRERINRHLDTLRGLVPCTEKMDKATLLAEVISQVKELKKNAVEASKGFLIPMDDDEVKVEPYNDEGGEGSMSCSYKASVCCDYRSELLSDLRQALNGLQIQLMRAEISTLGGRVKNVFVFTCCKKEHINIEACQLLPSTVHQALSSVLEKASSSLEYSLGMSLRSKRRRLCFFENSTPS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2113 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 122 IPR036638 GO:0046983
Sto13g2113 262 MobiDBLite consensus disorder prediction 36 58 - -
Sto13g2113 262 PANTHER TRANSCRIPTION FACTOR BHLH30 5 260 IPR045847 GO:0003700|GO:0006355
Sto13g2113 262 Gene3D - 68 129 IPR036638 GO:0046983
Sto13g2113 262 Pfam Helix-loop-helix DNA-binding domain 75 120 IPR011598 GO:0046983
Sto13g2113 262 SMART finulus 77 126 IPR011598 GO:0046983
Sto13g2113 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 120 IPR011598 GO:0046983
Sto13g2113 262 Coils Coil 171 191 - -
Sto13g2113 262 PANTHER DNA BINDING PROTEIN-LIKE 5 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2113 Sto-Chr13 28132584 28135563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2113 60 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 43.646 1.46e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto13g2113 HLH 5.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2113 - - gmx:100804756 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2113 13 28132584 28135563 Sto13g2113 13 28132584 28135563 ECH