Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2083 ATGGATCCTTCAGGCCCACCTATGACTGCCATAGACAGATTCCTATGGAGCCAGCATCATGCACAGAACAACCATTTGTGCACCTTTGCTTCTTCCACCACTCCAAATTGCAACATCAATAATATGTGGCCTAATTTTATGGATGACCAGAAGGTTTTGAATTGGACACACACCCAGATTTCTACATTGTGTCTGAAAGAAGACGTGCAAGTTTCAGCAGGGAATAAGAATAGTAATAATGGTAAGGTAATGGTGGGGATGAGGAGGACTAAGAAAGGGTCCAGTTCTGTGTCTTTGATCAAAGGACAATGGACTAATGAAGAAGACAGGAAGTTAGTAGGGTTGGTGAAGCAATATGGTGTGAGAAAATGGGCTGAAATAGCTGAGGAGATGGATGGCAGAGCCGGGAAGCAGTGTAGAGAGAGATGGCATAATCATTTGCGTCCAGATATTAAgAAAGAGAGttggagtgaagaagaagagaggataTTAGTAGAAACACATGCGAAGGTGGGGAATCGTTGGGCAGAAATAGCGAAGAGCATTCCAGGGAGAACAGAGAATGCAATAAAGAACCACTGGAATGCCACTAAAAGAAGGCAGAATTcaaggagaaagaagaagaacacacaaagaTCGAATCGGTCAAAGCCACACTCCTCTGTACTTGAAGACTACATCAGAAGCAAGAACCTTAGTAACTCCTCCATCAACACCAACACTATCCAGAACATAATCCCAGAAATCCAATCTGAACCCTCCTCTGAATCTGTAATGAATAATGAGGAATACCCATCATTTATAGCTGATCCAATCGACGATGAATTGCTGTATTTGCAGCATTTGTACGCAGAGAATCAGAATCAGAATCAGCAACCTCTGGTGGATGATGTTAAGCAGTCTGGGAATTCTTCTTCAACTTCCTACTTCTTGTTGGACTTTTGTCAAACAGATGGTGAGCGCCGTACTGAAGGTGGAGGATTGGCCTATTCCAATGAGAGCCTACTAGCTAAGGAGGCTGCTACTTCCAACATTAAAGTCCCTCAATCTGATCTTTATCTCTCTCACTTGCTCAATGGAACACCCCATTCATCTTTTTCCTCTGGCTATGAAAATCAAAACATGAACATGGATTTGCAGCAACTGGGTTATCAAGATTGTGaagaaggaaagagagagatggaTTTGATGGAGATGGTTTGTTCTTCTCTGTTTTCTTCCAGCGGCTAG 1230 0.4016 MDPSGPPMTAIDRFLWSQHHAQNNHLCTFASSTTPNCNINNMWPNFMDDQKVLNWTHTQISTLCLKEDVQVSAGNKNSNNGKVMVGMRRTKKGSSSVSLIKGQWTNEEDRKLVGLVKQYGVRKWAEIAEEMDGRAGKQCRERWHNHLRPDIKKESWSEEEERILVETHAKVGNRWAEIAKSIPGRTENAIKNHWNATKRRQNSRRKKKNTQRSNRSKPHSSVLEDYIRSKNLSNSSINTNTIQNIIPEIQSEPSSESVMNNEEYPSFIADPIDDELLYLQHLYAENQNQNQQPLVDDVKQSGNSSSTSYFLLDFCQTDGERRTEGGGLAYSNESLLAKEAATSNIKVPQSDLYLSHLLNGTPHSSFSSGYENQNMNMDLQQLGYQDCEEGKREMDLMEMVCSSLFSSSG 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2083 409 CDD SANT 162 198 IPR001005 -
Sto13g2083 409 Gene3D - 100 152 - -
Sto13g2083 409 Gene3D - 155 224 - -
Sto13g2083 409 CDD SANT 104 147 IPR001005 -
Sto13g2083 409 PANTHER MYB TRANSCRIPTION FACTOR 14 375 - -
Sto13g2083 409 Pfam Myb-like DNA-binding domain 104 161 - -
Sto13g2083 409 SMART sant 100 149 IPR001005 -
Sto13g2083 409 SMART sant 152 200 IPR001005 -
Sto13g2083 409 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 151 IPR017930 -
Sto13g2083 409 ProSiteProfiles Myb-like domain profile. 148 198 IPR001005 -
Sto13g2083 409 MobiDBLite consensus disorder prediction 186 221 - -
Sto13g2083 409 MobiDBLite consensus disorder prediction 197 214 - -
Sto13g2083 409 PANTHER MYB PROTEIN-RELATED 14 375 - -
Sto13g2083 409 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 202 IPR017930 -
Sto13g2083 409 SUPERFAMILY Homeodomain-like 98 194 IPR009057 -
Sto13g2083 409 ProSiteProfiles Myb-like domain profile. 96 147 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2083 Sto-Chr13 27939242 27941177 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2083 4 407 MYB Transcription Factor Family AT5G58850 38.063 1.02e-79 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto13g2083 Myb_DNA-bind_6 1.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2083 K09422 - gmx:100786295 306.605