Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sto13g2075 | ATGAAGCAAAGCAAAGCGACTAGAAACTCAGCAGTGAAGATCCCAGTAAAAAGTTTCGCACTTTTtgggtttggttcgatttgttGTTTCATGCGAGATGTAAAGCGAGTCGGTTGGCTCATCTTCTTTCTGTGGAATTCTTTGGCAATGGCTGGTGGCACGAACAGTCTTCTTTCTCCAAAGGGTGTGAACTATGAAGTGGCTGCTTTGATGTCGATgaagaataaaatgaaagaCGAATTGCGAGTTATGGATGGTTGGGATATTAATTCGGTTGATCCTTGTACTTGGAACATGGTCGGTTGCTCTGCTGAGGGTTATGTGATTTCCCTGGACATGGCCAGTATGGATTTATCTGGAACCCTTTCCCCAGGCATTGGGAATTTGAGCCACCTCCGAACATTgTTATTGCAGAACAATCAGTTATCAGGTCCCATTCCTGGTGAGATAGGAAAGCTTTTGGAGCTTCAGACTCTTGACCTCTCTGGTAACCAGTTTGTTGGTGAAATTCCTAGTTCTTTGGGCTCTTTGACTCACCTAAGTTACTTGCGGCTCAGTAGAAACAATCTGTCTGGACAGATTCCTCATCTCATTGCAAATCTCACAGGCCTGTCATTCTTGGACTTGTCATTCAATAATCTCAGTGGCCCCACTCCAAAAATTTTAGCTAAAGGTTACAGTATTTCAGGAAACAATTTCCTCTGTACATCTTCATCAGCACAAATTTGTGTGGGTGTTTCAGAACCATTCAATgGTTCATCTCCAGAAGTTGGTAGTCATCGCCATTGGGTGCTTTCTGTTGCTATTGGTATTAGTTGCACATTTGTAATTTCAGTAATGCTACTCATCTATTGGGTGCATTGGTACAGGTCACGCATCCTCTGCACATCTTATGTAGAGCAAGATTCTGAGTTTGACATTGGTCATTTGAAGAGGTTTTCCTTCCGTGAATTACAATCTGCTACAAGCAATTTCAGTCCAAAAAATATCCTAGGACAAGGTGGATTTGGTGTTGTCTACAAAGGATGTCTTCCAAATAAAATGATGGTGGCAGTGAAGAGGCTGAAAGATCCCAATTACACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAAATGATCGGCTTGGCAGTGCATAGGAATCTCTTACGTCTCTATGGCTTTTGTATGACATCCGATGAGAGATTACTTGTTTACCCTTACATGCCTAATGGCAGTGTTGCTGATCGCTTGAGAGACACTTGCCGTGAAAAGCCATCATTGGACTGGAACAGACGAATGCGAATTGCTCTTGGGGCTGCACGTGGGCTTCTATATTTACATGAACAGTGCAACCCAAAAATTATCCACAGGGATGTTAAGGCTGCTAACATTTTACTAGATGAAAGCTTTGAAGCTGTGGTGGGGGATTTTGGTCTCGCCAAGCTCTTGGATCAAAGAGATTCACATGTCACTACTGCAGTACGAGGCACTGTAGGGCACATTGCCCCAGAGTATCTCTCCACTGGACAGTCTTCTGAAAAAACTGATGTTTTCGGATTTGGCATATTACTTTTGGAGCTCATTACAGGACAAAAGGCATTGGATGCTGGAAATGGTCAGGTCCAGAAGGGAATGATTCTTGATTGGGTTAAAACCTTATATGAAGAGAAGCGGCTGGAAGTTCTAGTAGATAGGGATCTGAGGGGACGTTTTGATCCAATAGAGTTGGAAAAAGCAGTGGATTTGTTATTACAGTGTACTCAATCGCATCCCGGCCTTCGGCCAAAGATGTCGGAAGTCTTGAAGATCCTGGAAGGGCTAGTTGGGCAAGGGCAGCCGGAGGAGTCTCGAGGCGGAGCAGCTGAGGGCAGCTTGGGTGAAGGAACTAGTATACGTGGAGATGAGACTTCAAAAGAGGTGGATAAGGATCCAGGATTGAGTAAGGAACTAAAGGATGGGCCTGAAGAAGCTGTGGACGAGGACATGCGAAATTTGGTTAGCGAGGCAGTACCTGAGACCGTGGTTGTAATAGATTCTGCTGAGACAGGGCATGTGAATAGAGATAATAGGAAGTTGGAAGTGAAGGTGAATGAATCAGGGTTGAGCAAGGTAACCATGAGAGCTCCTAAAGGGGCGTCTGAAGCAGATAAGAATTCATGTGTGATTGATATAAAGTGTAGTAGCCGCCAAGAGTATAGCGAGAATTTGGAGGGTGAAAGGATTTGTAGGATTTGCCATCTGGCTGCTGGGCAACCATCAGATGCAACAGCTGCTAGTACTAATAGCAGTGCAACTACTGGAGATTTAATTCAGCTTGGCTGTGCGTGTAAAGATGAGCTAGGTATTGCACACAGTCATTGTGCTGAGGCATGGTTCAAGCTAAAAGGAAACAGATTGTGCGAAATATGTGGTGAGACTGCAAAAAATGTGTCGGGTGTTACCGATGCTGGATTTATGGAAGAGTGGAATGAAAGAAGATTATTGACAGCAGTAATACCTCGTCAGGCATATGTGGTGGATGCTGGCGAGGACAGCCATTTTTTTCAGCATTTACCTGGCTTCTACAATTCAAAAAGAATCCACTGTCATGTTGTGGAAATTAAAGGTGTTTATTTTCTTCTTGTGGTATTTGACATTTGTGAATTCATCAATATCTCTGGTTGTCGTTTCCTTGTGAATATCATACTAGagtggagtgaagaagaagagaggataTTAGTAGAAACACATGCGAAGGTGGGGAATCGTTGGGCAGAAATAGCGAAGAGCATTCCAGGGAGAACAGAGAATGCAATAAAGAACCACTGGAATGCCACTAAAAGAAGGCAGAATTcaaggagaaagaagaagaacacacaaagaTCGAATCGGTCAAAGCCACACTCCTCTGTACTTGAAGACTACATCAGAAGCAAGAACCTTAGTAACTCCTCCATCAACACCAACACTATCCAGAACATAATCCCAGAAATCCAATCTGAACCCTCCTCTGAATCTGTAATGAATAATGAGGAATACCCATCATTTATAGCTGATCCAATCGACGATGAATTGCTGTATTTGCAGCATTTGTACGCAGAGAATCAGAATCAGAATCAGCAACCTCTGGTGGATGATGTTAAGCAGTCTGGGAATTCTTCTTCAACTTCCTACTTCTTGTTGGACTTTTGTCAAACAGATGGTGAGCGCCGTACTGAAGGTGGAGGATTGGCCTATTCCAATGAGAGCCTACTAGCTAAGGAGGCTGCTACTTCCACATTAAAGTCCCTCAATCTGATCTTATCTCTCTCACTTGCTCAATGGAACACCCCATTCATCTTTTTCCTCTGGCTATGA | 3315 | 0.4238 | MKQSKATRNSAVKIPVKSFALFGFGSICCFMRDVKRVGWLIFFLWNSLAMAGGTNSLLSPKGVNYEVAALMSMKNKMKDELRVMDGWDINSVDPCTWNMVGCSAEGYVISLDMASMDLSGTLSPGIGNLSHLRTLLLQNNQLSGPIPGEIGKLLELQTLDLSGNQFVGEIPSSLGSLTHLSYLRLSRNNLSGQIPHLIANLTGLSFLDLSFNNLSGPTPKILAKGYSISGNNFLCTSSSAQICVGVSEPFNGSSPEVGSHRHWVLSVAIGISCTFVISVMLLIYWVHWYRSRILCTSYVEQDSEFDIGHLKRFSFRELQSATSNFSPKNILGQGGFGVVYKGCLPNKMMVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTSDERLLVYPYMPNGSVADRLRDTCREKPSLDWNRRMRIALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDAGNGQVQKGMILDWVKTLYEEKRLEVLVDRDLRGRFDPIELEKAVDLLLQCTQSHPGLRPKMSEVLKILEGLVGQGQPEESRGGAAEGSLGEGTSIRGDETSKEVDKDPGLSKELKDGPEEAVDEDMRNLVSEAVPETVVVIDSAETGHVNRDNRKLEVKVNESGLSKVTMRAPKGASEADKNSCVIDIKCSSRQEYSENLEGERICRICHLAAGQPSDATAASTNSSATTGDLIQLGCACKDELGIAHSHCAEAWFKLKGNRLCEICGETAKNVSGVTDAGFMEEWNERRLLTAVIPRQAYVVDAGEDSHFFQHLPGFYNSKRIHCHVVEIKGVYFLLVVFDICEFINISGCRFLVNIILEWSEEEERILVETHAKVGNRWAEIAKSIPGRTENAIKNHWNATKRRQNSRRKKKNTQRSNRSKPHSSVLEDYIRSKNLSNSSINTNTIQNIIPEIQSEPSSESVMNNEEYPSFIADPIDDELLYLQHLYAENQNQNQQPLVDDVKQSGNSSSTSYFLLDFCQTDGERRTEGGGLAYSNESLLAKEAATSTLKSLNLILSLSLAQWNTPFIFFLWL | 1104 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sto13g2075 | 1104 | CDD | SANT | 890 | 933 | IPR001005 | - | |
Sto13g2075 | 1104 | MobiDBLite | consensus disorder prediction | 604 | 652 | - | - | |
Sto13g2075 | 1104 | SUPERFAMILY | RING/U-box | 732 | 799 | - | - | |
Sto13g2075 | 1104 | MobiDBLite | consensus disorder prediction | 932 | 949 | - | - | |
Sto13g2075 | 1104 | Gene3D | - | 890 | 958 | - | - | |
Sto13g2075 | 1104 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 447 | 459 | IPR008271 | GO:0004672|GO:0006468 | |
Sto13g2075 | 1104 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 891 | 937 | IPR017930 | - | |
Sto13g2075 | 1104 | SMART | sant | 887 | 935 | IPR001005 | - | |
Sto13g2075 | 1104 | SMART | ringv_2 | 734 | 797 | IPR011016 | GO:0008270 | |
Sto13g2075 | 1104 | SUPERFAMILY | L domain-like | 65 | 234 | - | - | |
Sto13g2075 | 1104 | MobiDBLite | consensus disorder prediction | 924 | 956 | - | - | |
Sto13g2075 | 1104 | Pfam | Protein kinase domain | 328 | 595 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Sto13g2075 | 1104 | SUPERFAMILY | Homeodomain-like | 889 | 940 | IPR009057 | - | |
Sto13g2075 | 1104 | Gene3D | Transferase(Phosphotransferase) domain 1 | 401 | 605 | - | - | |
Sto13g2075 | 1104 | SUPERFAMILY | Protein kinase-like (PK-like) | 309 | 597 | IPR011009 | - | |
Sto13g2075 | 1104 | ProSiteProfiles | Myb-like domain profile. | 891 | 933 | IPR001005 | - | |
Sto13g2075 | 1104 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 727 | 803 | IPR011016 | GO:0008270 | |
Sto13g2075 | 1104 | ProSiteProfiles | Protein kinase domain profile. | 325 | 601 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Sto13g2075 | 1104 | Gene3D | Ribonuclease Inhibitor | 63 | 245 | IPR032675 | - | |
Sto13g2075 | 1104 | CDD | RING_CH-C4HC3_MARCH | 735 | 797 | - | - | |
Sto13g2075 | 1104 | Pfam | Myb-like DNA-binding domain | 890 | 930 | IPR001005 | - | |
Sto13g2075 | 1104 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 42 | 610 | - | - | |
Sto13g2075 | 1104 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 728 | 801 | IPR013083 | - | |
Sto13g2075 | 1104 | Pfam | RING-variant domain | 735 | 796 | IPR011016 | GO:0008270 | |
Sto13g2075 | 1104 | Gene3D | Phosphorylase Kinase; domain 1 | 295 | 400 | - | - | |
Sto13g2075 | 1104 | Pfam | Leucine rich repeat N-terminal domain | 64 | 103 | IPR013210 | - | |
Sto13g2075 | 1104 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED | 42 | 610 | - | - | |
Sto13g2075 | 1104 | ProSitePatterns | Protein kinases ATP-binding region signature. | 331 | 353 | IPR017441 | GO:0005524 | |
Sto13g2075 | 1104 | SMART | serkin_6 | 325 | 596 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Sto13g2075 | 1104 | MobiDBLite | consensus disorder prediction | 625 | 652 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sto13g2075 | Sto-Chr13 | 27872851 | 27887640 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sto13g2075 | 71 | 603 | Receptor kinase-like Gene Family | AT5G45780 | 74.813 | 0.0 | 813 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-II | Sto13g2075 | Pkinase | 1.1e-44 | CL0016 | ||
TF | MYB-related | Sto13g2075 | Pkinase | 1.1e-44 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sto13g2075 | - | - | gmx:100810610 | 981.859 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Sto13g2075 | 13 | 27872851 | 27887640 | Sto13g2065 | 13 | 27808119 | 27810353 | CCT |