Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2065 ATGGATCAGGCAAGAAAGCAAGAAAGTGATGAGGTATTGGATCTTGGGGTTGCAATTGATGCAGCAGCTGAGGGCAGCTTGGGTGAAGGAACTAGTATACGTGGAGATGAGACTTCAAAAGAGGTGGATAAGGATCCAGGATTGAGTAAGGAACTAAAGGATGGGCCTGAAGAAGCTGTGGACGAGGACATGCGTGATCAGAAAAAAACCAATGACACATTCCATGGAGTTGATCATGGAACAAGTTATAATTCAGGAAATTTGGTTAGCGAGGCAGTACCTGAGACCGTGGTTGTAATAGATTCTGCTGAGACAGGGCATGTGAATAGAGATAATAGGAAGTTGGAAGTGAAGGTGAATGAATCAGGGTTGAGCAAGGTAACCATGAGAGCTCCTAAAGGGGCGTCTGAAGCAGATAAGAATTCATGTGTGATTGATATAAAGTGTAGTAGCCGCCAAGAGTATAGCGAGAATTTGGAGGGTGAAAGGATTTGTAGGATTTGCCATCTGGCTGCTGGGCAACCATCAGATGCAACAGCTGCTAGTACTAATAGCAGTGCAACTACTGGAGATTTAATTCAGCTTGGCTGTGCGTGTAAAGATGAGCTAGGTATTGCACACAGTCATTGTGCTGAGGCATGGTTCAAGCTAAAAGGAAACAGATTGTGCGAAATATGTGGTGAGACTGCAAAAAATGTGTCGGGTGTTACCGATGCTGGATTTATGGAAGAGTGGAATGAAAGAAGATTTATTGACAGCAGTAATACCTCGTCAGGCATATGTGGTGGATGCTGGCGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTAATAGCTTTTGTTCTGCCATGGTTTTTCCGTGTGAATATGTTCTGA 882 0.441 MDQARKQESDEVLDLGVAIDAAAEGSLGEGTSIRGDETSKEVDKDPGLSKELKDGPEEAVDEDMRDQKKTNDTFHGVDHGTSYNSGNLVSEAVPETVVVIDSAETGHVNRDNRKLEVKVNESGLSKVTMRAPKGASEADKNSCVIDIKCSSRQEYSENLEGERICRICHLAAGQPSDATAASTNSSATTGDLIQLGCACKDELGIAHSHCAEAWFKLKGNRLCEICGETAKNVSGVTDAGFMEEWNERRFIDSSNTSSGICGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2065 293 MobiDBLite consensus disorder prediction 21 87 - -
Sto13g2065 293 Pfam RING-variant domain 165 226 IPR011016 GO:0008270
Sto13g2065 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 238 IPR013083 -
Sto13g2065 293 PANTHER ZINC FINGER, RING-CH-TYPE 51 293 - -
Sto13g2065 293 SUPERFAMILY RING/U-box 162 229 - -
Sto13g2065 293 SMART ringv_2 164 227 IPR011016 GO:0008270
Sto13g2065 293 ProSiteProfiles Zinc finger RING-CH-type profile. 157 233 IPR011016 GO:0008270
Sto13g2065 293 MobiDBLite consensus disorder prediction 34 75 - -
Sto13g2065 293 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 51 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2065 Sto-Chr13 27808119 27810353 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2065 136 292 C3H Transcription Factor Family AT5G05830 37.654 4.47e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2065 - - gmx:100791129 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2075 13 27872851 27887640 Sto13g2065 13 27808119 27810353 CCT
Sto13g2065 13 27808119 27810353 Sto13g2065 13 27808119 27810353 ECH