Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2055 ATGGATGCCTCACGGGTCTTACAGAGCTTGGACTCTCTCTGGTTCTTCACCAACATCTTGACTTGCCCAGATCACCCTCTAGGTGAGACGACTCTGCTTCAATCTCCTCCTTCCAAATCCTCTGAATCTGAGACACAGAAGAAAcacagaggaggaggaagaagaagaaggagaaggagaaaggTGAGGGTAGTGACCGAGTCATTCTTGAAGTTGGATATGCATACTAGGATGCTTCCGTACGATGATGAAACAGCAATGAAGGAGCATCTCAAGTCATGGGCTTATGCAGTTGCATGCACTGTGAAGTCAAAGAAGCCATCCTCCAGAGGCCACCCGAGGTTCGTCGGCGTTCGCCAGAGGCCATCCGGCCGCTGGGTCGCCGAGATCAAGGACTCCCTCCAGAAGGTCCGCCTCTGGCTCGGAACCTTCGACACCGCGGAGGACGCCGCTCGCGCCTACGACACCGCCGCTCGCGCCCTCCGCGGCGCCAATGCTCGCACCAACTTCGACCTCCCACACTCCGCCGCCTCGGCGGGAGGCGGCTTCAAGTACGTGCCGCCGGAGAATCTGGAGCCGTTTTCGTTCGAGGAGATGTGCGAGGCAGAGACGGGGGAGGGGCTTCTGGGTGCACTGAAGGCGAAACTGTTGGATGAGAAGGAAAAGGGGAAGGGTAGTTTGGGAAGTTTATCGAGCTCGACAATCCAGAAGCAGAAACAGAAAGAAACAGAGATGATATGGAAAGGCAAGAGTAGTACTAGTACTAGTAGTGTGGCGGTTGTTTCTTCAGGACATGATGATGATGGAATGATGAGGAGCATGGGTTGGTCCAACTCCAAGGATACGGAGTATGTAGCGCCTAATTGGGTGGCAGAGGCACACACGACGACTCAGCGTGCTGAGGGGAATGGTTTGCTTGGTGATTGTGTGAGTGGAGGCATGATGGGTGGGAGGAGTGTGTGGATGGGTGAGGGAATGAATTTGGGGGAAATGGGAGGAGGAGCAAGTGAAGGAATATTGTGGACATGTGAAGAAGCACAACAACAACAAGAGATGAATAATGCGCATTGTGACAGCAATAGTTGGTTTAGTTCCAGTGGCTCTTGGGATCCTCTGCTCTATGCTGCTGCTTCTGAGCTTGCTTGA 1146 0.5175 MDASRVLQSLDSLWFFTNILTCPDHPLGETTLLQSPPSKSSESETQKKHRGGGRRRRRRRKVRVVTESFLKLDMHTRMLPYDDETAMKEHLKSWAYAVACTVKSKKPSSRGHPRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDTAARALRGANARTNFDLPHSAASAGGGFKYVPPENLEPFSFEEMCEAETGEGLLGALKAKLLDEKEKGKGSLGSLSSSTIQKQKQKETEMIWKGKSSTSTSSVAVVSSGHDDDGMMRSMGWSNSKDTEYVAPNWVAEAHTTTQRAEGNGLLGDCVSGGMMGGRSVWMGEGMNLGEMGGGASEGILWTCEEAQQQQEMNNAHCDSNSWFSSSGSWDPLLYAAASELA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2055 381 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Sto13g2055 381 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Sto13g2055 381 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Sto13g2055 381 Gene3D AP2/ERF domain 114 172 IPR036955 GO:0003700|GO:0006355
Sto13g2055 381 Pfam AP2 domain 113 163 IPR001471 GO:0003700|GO:0006355
Sto13g2055 381 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 105 239 - -
Sto13g2055 381 CDD AP2 113 171 IPR001471 GO:0003700|GO:0006355
Sto13g2055 381 SUPERFAMILY DNA-binding domain 114 172 IPR016177 GO:0003677
Sto13g2055 381 SMART rav1_2 114 177 IPR001471 GO:0003700|GO:0006355
Sto13g2055 381 MobiDBLite consensus disorder prediction 27 60 - -
Sto13g2055 381 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 105 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2055 Sto-Chr13 27746844 27750305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2055 103 170 AP2-EREBP Transcription Factor Family AT5G19790 69.118 5.40e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto13g2055 AP2 2.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2055 - - mtr:MTR_2g016730 158.303