LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto13g2055	ATGGATGCCTCACGGGTCTTACAGAGCTTGGACTCTCTCTGGTTCTTCACCAACATCTTGACTTGCCCAGATCACCCTCTAGGTGAGACGACTCTGCTTCAATCTCCTCCTTCCAAATCCTCTGAATCTGAGACACAGAAGAAAcacagaggaggaggaagaagaagaaggagaaggagaaaggTGAGGGTAGTGACCGAGTCATTCTTGAAGTTGGATATGCATACTAGGATGCTTCCGTACGATGATGAAACAGCAATGAAGGAGCATCTCAAGTCATGGGCTTATGCAGTTGCATGCACTGTGAAGTCAAAGAAGCCATCCTCCAGAGGCCACCCGAGGTTCGTCGGCGTTCGCCAGAGGCCATCCGGCCGCTGGGTCGCCGAGATCAAGGACTCCCTCCAGAAGGTCCGCCTCTGGCTCGGAACCTTCGACACCGCGGAGGACGCCGCTCGCGCCTACGACACCGCCGCTCGCGCCCTCCGCGGCGCCAATGCTCGCACCAACTTCGACCTCCCACACTCCGCCGCCTCGGCGGGAGGCGGCTTCAAGTACGTGCCGCCGGAGAATCTGGAGCCGTTTTCGTTCGAGGAGATGTGCGAGGCAGAGACGGGGGAGGGGCTTCTGGGTGCACTGAAGGCGAAACTGTTGGATGAGAAGGAAAAGGGGAAGGGTAGTTTGGGAAGTTTATCGAGCTCGACAATCCAGAAGCAGAAACAGAAAGAAACAGAGATGATATGGAAAGGCAAGAGTAGTACTAGTACTAGTAGTGTGGCGGTTGTTTCTTCAGGACATGATGATGATGGAATGATGAGGAGCATGGGTTGGTCCAACTCCAAGGATACGGAGTATGTAGCGCCTAATTGGGTGGCAGAGGCACACACGACGACTCAGCGTGCTGAGGGGAATGGTTTGCTTGGTGATTGTGTGAGTGGAGGCATGATGGGTGGGAGGAGTGTGTGGATGGGTGAGGGAATGAATTTGGGGGAAATGGGAGGAGGAGCAAGTGAAGGAATATTGTGGACATGTGAAGAAGCACAACAACAACAAGAGATGAATAATGCGCATTGTGACAGCAATAGTTGGTTTAGTTCCAGTGGCTCTTGGGATCCTCTGCTCTATGCTGCTGCTTCTGAGCTTGCTTGA	1146	0.5175	MDASRVLQSLDSLWFFTNILTCPDHPLGETTLLQSPPSKSSESETQKKHRGGGRRRRRRRKVRVVTESFLKLDMHTRMLPYDDETAMKEHLKSWAYAVACTVKSKKPSSRGHPRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDTAARALRGANARTNFDLPHSAASAGGGFKYVPPENLEPFSFEEMCEAETGEGLLGALKAKLLDEKEKGKGSLGSLSSSTIQKQKQKETEMIWKGKSSTSTSSVAVVSSGHDDDGMMRSMGWSNSKDTEYVAPNWVAEAHTTTQRAEGNGLLGDCVSGGMMGGRSVWMGEGMNLGEMGGGASEGILWTCEEAQQQQEMNNAHCDSNSWFSSSGSWDPLLYAAASELA	381

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Sto13g2055	381	PRINTS	Ethylene responsive element binding protein signature	115	126	IPR001471	GO:0003700\|GO:0006355
Sto13g2055	381	PRINTS	Ethylene responsive element binding protein signature	137	153	IPR001471	GO:0003700\|GO:0006355
Sto13g2055	381	ProSiteProfiles	AP2/ERF domain profile.	114	171	IPR001471	GO:0003700\|GO:0006355
Sto13g2055	381	Gene3D	AP2/ERF domain	114	172	IPR036955	GO:0003700\|GO:0006355
Sto13g2055	381	Pfam	AP2 domain	113	163	IPR001471	GO:0003700\|GO:0006355
Sto13g2055	381	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP	105	239	-	-
Sto13g2055	381	CDD	AP2	113	171	IPR001471	GO:0003700\|GO:0006355
Sto13g2055	381	SUPERFAMILY	DNA-binding domain	114	172	IPR016177	GO:0003677
Sto13g2055	381	SMART	rav1_2	114	177	IPR001471	GO:0003700\|GO:0006355
Sto13g2055	381	MobiDBLite	consensus disorder prediction	27	60	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto13g2055	Sto-Chr13	27746844	27750305	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto13g2055	103	170	AP2-EREBP Transcription Factor Family	AT5G19790	69.118	5.40e-26	103

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Sto13g2055		AP2	2.4e-13	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto13g2055	-		-	mtr:MTR_2g016730	158.303

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