Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2015 ATGGGAAGAGGGAAGATTGAGATAAAGAGGATAGAGAACACCACAAATCGCCAAGTCACTTTCTGTAAGCGCAGGAATGGGCTTCTCAAGAAGGCTTATGAACTTTCTGTGCTCTGTGATGCAGAGGTTGCTTTAATCGTCTTCTCTAGCCGTGGACGCCTCTATGATGTAAGAGCAACTATTGATAGGTATAAGAAAGCATGTTCAGACTCTACTGGTGGATCTACTTCTGAGTATTACCAGCAAGAAGCTGCCAAACTGCGTGCACAGATTAGTAACCTGCAGAACCACAACAGGCAAATGATGGGTGAGGGTTTGAGCAATCTGGGTTCAAAGGAACTCAAAAACCTGGAGGGTAGGTTAGAAAGAGGGATTAGCAGAATTCGTTCCAAAAAGAATGAGCTGTTATTTGCAGAAATTGAGTACATGCAGAAGAGGGAAATAGACTTGCACAACAACAATCAGCTTCTTCGAGCAAAGATAGCTGAAAGTGAGAGGAGGCAGCAGCAAGAAAACATGAATGTGGGAACAAACTACGAAGCTATGCAGTCTCAGCAGCAATTTGAGAGTAGACCTTACTTCCAAGTCACTGCATTACAACCCAATCATCATTATCCACGTCAAGACCACTTGCCCCTTCACTTAGTCTAA 651 0.4363 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYDVRATIDRYKKACSDSTGGSTSEYYQQEAAKLRAQISNLQNHNRQMMGEGLSNLGSKELKNLEGRLERGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERRQQQENMNVGTNYEAMQSQQQFESRPYFQVTALQPNHHYPRQDHLPLHLV 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2015 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto13g2015 216 Coils Coil 114 134 - -
Sto13g2015 216 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Sto13g2015 216 ProSiteProfiles K-box domain profile. 77 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto13g2015 216 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977|GO:0045944
Sto13g2015 216 Pfam K-box region 76 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto13g2015 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto13g2015 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto13g2015 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto13g2015 216 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 1 206 - -
Sto13g2015 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 206 - -
Sto13g2015 216 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Sto13g2015 216 Coils Coil 77 104 - -
Sto13g2015 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Sto13g2015 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2015 Sto-Chr13 27435137 27444425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2015 1 216 MADS-box Gene Family AT3G58780 63.519 1.23e-93 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto13g2015 K-box 9.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2015 K09264 - twl:120014444 323.168