Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1998 ATGGATGAGGCACAGGGTAGTTCTAGTTCTTTGCCCCCTTTCTTGACAAAGACTTATGAGATGGTGGACGATTCTTCCACAGATTCGATTGTTTCTTGGAGTGCCTCTAATAAAAGTTTCATTGTATGGAATCCGCCAGAATTTTCGGGTGTGTTGCTACCTAGATTCTTTAAGCACAATAACTTCTCAAGTTTCATCAGACAGTTGAACACATATGGTTTTAAAAAAGCTGACCCAGAACAATGGGAGTTTGCAAATGAAGATTTCGTAAGAGGTCAACCACATCTTTTGAAGAACATTCATAGACGAAAGCCAGTTCATAGCCATTCTTTACAGAATCTCCAAGGGCAAGGAGCTTCTGCATTAACAGAACTGGAAAGGCAGAGTTTAAAAGACGAAATAGAGAGGCTGAAACATGAAAAAGAGCAACTTTGTCTAGAGTTACGAAGACATGAACAGGAATGGCAAGTAAATAAGACACAACTAAATTGCTCAAAGGAGCGTTTGGGAAAGTTGGAAAGCAATCAGCAAAAGATGGTCTCTTCTGTTTCTCAAGTGTTGCAGAAACCTGAAATTGCCTTAAATCTCTTGCAATTGTCAGAAACCCTGTATAGAAAACGAAGGTTGCCAAGAAGTGGTTACAATTGTGATGAAGCTGGTATTGAAGATGCTATGGAAACTTCCTCATTGATACCTAGAGATAATGCAGACAGTACCTCTGTTTTGACATTAAACATGGAGCGGTTGGATCAGCTGGAGTCATCTTTGGTATTTTGGGAGAGCATTGCTCTTGATTTTGGTGATAACTTTGTTAATAGTCATTCAAATATGGATTTTGATGAATCTACAAGTTGCATCGATAGTCCTGCTATCTCTTGTGTGCAACTTGATGTTGAACTTCGCCCTAAATCATCTGGAATTGACATGAACTCTGAGCCAGCTGCAGCTACTGTTCCTGATCCTGTTGCATCAAAAGAACTACCTGTAGGAACAACCACTGCAGTAACTGGTGTCAATGACCTATTCTGGGAACAGTTCTTGACAGAGAATCCCGGTTCATCAGAAACACAGGAAGTGCAGTCAGAACGAAAGGATTCTGATAGCAGAAAGAACGAAGGAAAACCTAGTGATGGTAGTAAACTCTGGTGGAACATGAGCAATATAAATAACCTTCCAGAACAGATGGGGCATCTTAGTCAAACAGAGAAAACTTGA 1215 0.4025 MDEAQGSSSSLPPFLTKTYEMVDDSSTDSIVSWSASNKSFIVWNPPEFSGVLLPRFFKHNNFSSFIRQLNTYGFKKADPEQWEFANEDFVRGQPHLLKNIHRRKPVHSHSLQNLQGQGASALTELERQSLKDEIERLKHEKEQLCLELRRHEQEWQVNKTQLNCSKERLGKLESNQQKMVSSVSQVLQKPEIALNLLQLSETLYRKRRLPRSGYNCDEAGIEDAMETSSLIPRDNADSTSVLTLNMERLDQLESSLVFWESIALDFGDNFVNSHSNMDFDESTSCIDSPAISCVQLDVELRPKSSGIDMNSEPAAATVPDPVASKELPVGTTTAVTGVNDLFWEQFLTENPGSSETQEVQSERKDSDSRKNEGKPSDGSKLWWNMSNINNLPEQMGHLSQTEKT 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1998 404 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 385 - -
Sto13g1998 404 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 385 IPR027725 -
Sto13g1998 404 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Sto13g1998 404 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto13g1998 404 Coils Coil 120 154 - -
Sto13g1998 404 Gene3D - 6 104 IPR036388 -
Sto13g1998 404 MobiDBLite consensus disorder prediction 348 404 - -
Sto13g1998 404 MobiDBLite consensus disorder prediction 358 376 - -
Sto13g1998 404 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto13g1998 404 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto13g1998 404 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto13g1998 404 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto13g1998 404 MobiDBLite consensus disorder prediction 380 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1998 Sto-Chr13 27305411 27306735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1998 7 404 HSF AT4G18880 53.580 1.52e-122 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sto13g1998 HSF_DNA-bind 6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1998 K09419 - gmx:100798004 629.017