Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1996 TTGACAAGGTATTGTAGATTCTTGCTTTTTGGATTTGAGGAAGATGAACTAGAACTGGGAAATGGAAGCCACATCAAAAGACCGAAGAAGGGATTGATTACACAAGAAATTGCTGAAACATTTTTAACAATTCCAAAGGACTTTTACTGCCCAATATCTTTGGAGTTGATGCGAGACCCGGTGATAATCTCCACAGGACAGCTGGAAAATGGACTACAACCTGCAAAGACTGTAGCTGCCCGAGAGATAAGATTGCTAGCAAAAACAGGCAAAGACAATCGAGCATTCATAGCAGAAGCTGGAGCAATACCCCATCTTCAGAAATTACTTTCATCTCCTATTGCTGTTGCTCAGGAGAATTCAGTGACTGCATTGCTTAACCTATCCATATACGAAAAGAATAAAAGCCGGATCATTGATGAGGAAGGTTGTCTGGAATCCATTATTGATGTGTTGAGATTAGGCCATACTACAGAGGCCAGGGAGAATGCTGCTGCGACATTGTTCAGCCTTTCAGCTGTCCATGACTACAAGAAGAGGATTGCAGATAAGCCAGGAGCCGTTGAAGCCCTATCAGGGCTTTTGCAAGAGGGTACCTtaagaggaaagaaagatgcAGTGACAGCTCTGTTCAATCTTTCCACCCACGCTGACAATTGTGGAAGAATGATAGAAGCAGGGGCTATAACAGCTCTAGTTGGGGCTTTGGGAACTGAAGGAGTAGCCGAGGAAGCGGCAGGTGCCCTTGCCTTGATTGTCCGGCAGCCAGTCGGAGCGAAAGCAGTGGTGAGGGAGGAAGAAGCAGTAGCCGGGTTGATGGGAATGATGCGTTGTGGGACACCACGGGGGAAAGAGAACGCCGTAGCAGCATTGCTTGAGCTGTGCCGGAGTGGCGGTACAGCTGCAACCGAGAGGGTAGTAAGAGCACCCGCATTGGCTGGTTTACTTCAAACCCTGCTTTTCACAGGAACAAAAAGAGCAAGAAGGAAAGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATGCTTCTCTACATTATGGTGGATTAGGCGTAGGGTATGCATTTGCCAGCAATTCGGCTGCAAATAGGGATACAAGTTTTGCTGGCGATGTTTCAGTATCAATGTCCATTTCTGTTCCTGCTTTGTAG 1155 0.458 LTRYCRFLLFGFEEDELELGNGSHIKRPKKGLITQEIAETFLTIPKDFYCPISLELMRDPVIISTGQLENGLQPAKTVAAREIRLLAKTGKDNRAFIAEAGAIPHLQKLLSSPIAVAQENSVTALLNLSIYEKNKSRIIDEEGCLESIIDVLRLGHTTEARENAAATLFSLSAVHDYKKRIADKPGAVEALSGLLQEGTLRGKKDAVTALFNLSTHADNCGRMIEAGAITALVGALGTEGVAEEAAGALALIVRQPVGAKAVVREEEAVAGLMGMMRCGTPRGKENAVAALLELCRSGGTAATERVVRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASNSAANRDTSFAGDVSVSMSISVPAL 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1996 384 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Sto13g1996 384 SUPERFAMILY ARM repeat 73 338 IPR016024 -
Sto13g1996 384 ProSiteProfiles U-box domain profile. 43 67 IPR003613 GO:0004842|GO:0016567
Sto13g1996 384 Gene3D - 67 216 IPR011989 -
Sto13g1996 384 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 67 365 - -
Sto13g1996 384 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 1 67 - -
Sto13g1996 384 SUPERFAMILY RING/U-box 32 67 - -
Sto13g1996 384 SMART arm_5 90 130 IPR000225 GO:0005515
Sto13g1996 384 SMART arm_5 131 173 IPR000225 GO:0005515
Sto13g1996 384 SMART arm_5 175 215 IPR000225 GO:0005515
Sto13g1996 384 SMART arm_5 256 296 IPR000225 GO:0005515
Sto13g1996 384 SMART arm_5 216 254 IPR000225 GO:0005515
Sto13g1996 384 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
Sto13g1996 384 Pfam U-box domain 44 67 IPR003613 GO:0004842|GO:0016567
Sto13g1996 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 66 IPR013083 -
Sto13g1996 384 Gene3D - 217 345 IPR011989 -
Sto13g1996 384 PANTHER U BOX DOMAIN-CONTAINING 67 365 - -
Sto13g1996 384 PANTHER U BOX DOMAIN-CONTAINING 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1996 Sto-Chr13 27288381 27289796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1996 53 384 U-box Gene Family AT1G29340 71.257 1.51e-144 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1996 - - jre:108979603 502.286