Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1993 ATGACTAGGGCTGTTCGCAGTAGGATACTCAAGGATGCAAATGGTGATATTAGTGATCATCTGCGCAACCACCTTCATCTGACAAACTGTATTCACTTGAAGAACCATATGCACAAGACCAGTCCCATACTAGCTGATAGGTCACTTATGAGGGACCTTGTTGTGCTGCAGAGGTCCTACTCTCTCAGGGACCCTTCTGCGAGCCCTCTATCATGGCATTCACCTTCAATAGTTGATGCGCTTTCCAAGAGAGTCGAAAATGATGCCAAGATTCAGGAACGAAGAAGATCTGTAGGCATTGAGAACAAGAAGGAACGCAGGAGATTATCACCCTCACCACCATTAGTTACTTTTGGTACATCAAAAGTTGCTCCAAGTGAGGGGAGTGATGATGATGTACGGGCATTTAGTGAACATAGTATCAAGAGTGGAATGAGGAATGGGATGAAAGTTGGGAGAGAAGAATCTGGCTTGAAGAACAATAGGCCTGATAGCTTGGGTGTCAATGAAGAGCACCTTCTCAATCAACATGGCCAAGATTTGGGTCAAGATCTCATTTCGAGGCATTCTGACTCTAAAGAGAGAAAGGGAAAACAAAAGGGGAAGCATATTCATGATGTTCAAGTTAAGACCCTCTCCGAGCAGCTGAAAGATATTCCACTTGATAGTGATGATTTAGCTTCTTCAAACTCTCATCTTCGTAGAAGGTCTTCTAGACAGGAGAAAACTATTAAGAAGCTAGAACCCAGCATGCGTGGTCATAGCAGTGGATTAAATAGGGCAAAAAGGTCTAAACTACGAAGTGCAAGAAGAAGTCGGGCCGCTATGGCATCAAGAGATATTGGGATTGAGAATGAATTGTCTGTGGCTTCCAACTCATTGGCTCAAGGTTCAAACCACCATAAATATCATATGGAGGAGGCGGATGATTATgtagaagaaaattttattaggGCTCCCAAAAATGGGTGTGGGATTCCTTGGAATTGGTCCAGAATTCATCATAGAGGTAAAACATTCATTGACATGGCTGGAAGAAGTTTAACATGTGGTTTGTCTGACTCGAGGCCAAAGAAAGGGACATTGGCCCCCAATGGTAGTAATATTCTTGATATGTCTGTGGCATCTGATCATTCAAGCTCATCTACTAAGTCTGATGCAGAGGCACAACCTTTGCTAGTTGATGCACCTGGATCTCAGGGAAACAATGAAAATGCTGGCTGGGGGCATAACTTTTCTGGGGAACTTGGTGTATTTGCTAATAATTTGCATAAGCATGATATTGATTCTGACCATGCTTCTGAAGCTAGATCTGGTGATCATCATAAGTTCAAAGGAAATCGCTATAGAAGACACCAAAGCTTGACACAAAAATATATGCCGCGGACCTTCAAAGATATGGTTGGACAGAATTTGGTGGTGCAAGCTCTTTCAAATGCAGtcataaaaagaaaagttgGGTTGTTATATGCGTTCTATGGACCTCATGGCACTGGAAAAACTTCCTGTGCTCGCATATTTGCTAGAGCTTTAAATTGCCAATCTTCAGAACACCCAAAACCTTGTGGCTTTTGTAACTCCTGTGTGGCATATGATATGGGTAAGAGTAGAAGTATAAGAGAAGTTGGTCCAGTCAGTAATATTGATTTAGAGAGCATCATAGATCTTCTTGATAGTATGCTTATTTCCCAGCCTTCATCTCAGTACAAGGTGTTTATTTTTGATGACTGTGATACTCTCCCAGCTGATTGCTGGAGTGCTATATCAAAGGTCATTGATCGAGCACCTAGACGTGTGGCTTTTATTCTTGTCAGTTCGAGTCTTGATGTATTGCCTCATATAATAATATCTCGGTGTCAGAAATTCTTTTTTCCAAAGCTGAAGGATGCAGATGTTATATATACATTGCAGTGGATTGCTACCAAAGAAGGTCTAGAAATTGAAAAGGATGCCCTGAAACTCATTGCATCAAGATCAGATGGATCAATGAGAGATGCTGAGATGACCCTTGAACAGTTGGGTTTGCTTGGGCTGAGAATATCTGTTCCTCTTGTCCAGGAATTGGCAGGGCTTATATCTGATGAGAAATTGGTGGGGCTGCTTGATCTGGCATTATCTGCAGACACAGTCAACACTGTGAAGAATTTGAGGGTTATCATGGAAAGGGGTATCGAGCCATTAGCTTTAATGTCACAGCTTGCTTCAATAATTACAGATATACTTGCTGGGACCTATGATTTCTCAAAAGAAAGGCAAAGAAGGAAGTTCTTTCATAGACAGCCATTATCCAAAAATGAAATGGGAAAACTGCGTCAGGCTTTGAAAACTTTATCCGAGGCTGAGAAGCAGTTGAGGATGTCCAATGACAAACTAACATGGCTGACAGCAGCATTGCTTCAACTTGCTCCTGATCAACAATATACATTGCCTACCCCATCTGATGCTAGTCTCAATCATAGTCCCTCAGCTCTAAACAATGTAAATGCGAGAGAAGCAGCAAGAAGAACTAGCAGTCATGTTGCCAGAGAGAGACGTTTATCGATGGATACTAGAATGGAAAATCTCTACACTGGAATTTCAGAGAGAAAAAGACTTTCTGGGGCAGGGGTTGCTCCTCAACAGGCATCATCACATGTTACTGATATGATTGGGGCAAATGATGGCCAGATTGGTAAAAGCCGTCGTCATGGAGTTGAAATGATATGGTTGGAGGTTCTTGAGAGGATTCAAGTTAATGGTCTCAAGGAGTTCTTATATCAAGAAGCTGAGCTGATATCTGTTAGTTTTGGTGCAGCCCCAACTGTGCAGCTAATGTTTAGTTCCCAACTGACCAAATCTACTGCTGAGAAGTTCAGGGGCCACATATTACAAGCATTTGAATCTGTCCTTGGATCTTCTGTAACAATAGAAATTAGGTGTGACTCAAATAAAGATTCAGGAGTAGGGCCTCACCCACCTCTTGTCTTGCCTACTACTCAAAATAATTCATCGAGGATTCGAGACTTAAATGGAGATTCTGTTGAAAAGAGAAAGGACGAAATTGTAGAAGAAGCAGCAGCTTCACATGGGGGCCAGAAGAGTAATGAGCAGCAGGTTGATGTTCATGCTGCATCTAATCAATCTTCAGAAGGAACACGCGCAAGACAAGCGTCATCGACTTCCCACAAGAATCCGCACTTAAGAAAGCTTAAGGATCAAAGACACAGTCAAAGTCTGGTCAGAAGTAAAGTATTACTAGCTCATGTAATTCAGCAGGCGGAAGGATCTGCAAAGCGAAGAAACGGGTGGTCGAAACACAAAGCAGTTTCCATTGCTGAAAAGCTTGAACAAGAGAATCTGAGACTCGAGTCAAGATCAAGGAGCTTACTATGCTGGAAAGCATCTAGTGGAACTCGTCAGAAGCTTTCACGTTTGAAGGTTCGAACCCGAAGACCTCATGCTCTGCTAAACCTTGTCTCATGTGGGAGATGTCTGTCTGCTAAATCTCCAAGGTAG 3495 0.4209 MTRAVRSRILKDANGDISDHLRNHLHLTNCIHLKNHMHKTSPILADRSLMRDLVVLQRSYSLRDPSASPLSWHSPSIVDALSKRVENDAKIQERRRSVGIENKKERRRLSPSPPLVTFGTSKVAPSEGSDDDVRAFSEHSIKSGMRNGMKVGREESGLKNNRPDSLGVNEEHLLNQHGQDLGQDLISRHSDSKERKGKQKGKHIHDVQVKTLSEQLKDIPLDSDDLASSNSHLRRRSSRQEKTIKKLEPSMRGHSSGLNRAKRSKLRSARRSRAAMASRDIGIENELSVASNSLAQGSNHHKYHMEEADDYVEENFIRAPKNGCGIPWNWSRIHHRGKTFIDMAGRSLTCGLSDSRPKKGTLAPNGSNILDMSVASDHSSSSTKSDAEAQPLLVDAPGSQGNNENAGWGHNFSGELGVFANNLHKHDIDSDHASEARSGDHHKFKGNRYRRHQSLTQKYMPRTFKDMVGQNLVVQALSNAVIKRKVGLLYAFYGPHGTGKTSCARIFARALNCQSSEHPKPCGFCNSCVAYDMGKSRSIREVGPVSNIDLESIIDLLDSMLISQPSSQYKVFIFDDCDTLPADCWSAISKVIDRAPRRVAFILVSSSLDVLPHIIISRCQKFFFPKLKDADVIYTLQWIATKEGLEIEKDALKLIASRSDGSMRDAEMTLEQLGLLGLRISVPLVQELAGLISDEKLVGLLDLALSADTVNTVKNLRVIMERGIEPLALMSQLASIITDILAGTYDFSKERQRRKFFHRQPLSKNEMGKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYTLPTPSDASLNHSPSALNNVNAREAARRTSSHVARERRLSMDTRMENLYTGISERKRLSGAGVAPQQASSHVTDMIGANDGQIGKSRRHGVEMIWLEVLERIQVNGLKEFLYQEAELISVSFGAAPTVQLMFSSQLTKSTAEKFRGHILQAFESVLGSSVTIEIRCDSNKDSGVGPHPPLVLPTTQNNSSRIRDLNGDSVEKRKDEIVEEAAASHGGQKSNEQQVDVHAASNQSSEGTRARQASSTSHKNPHLRKLKDQRHSQSLVRSKVLLAHVIQQAEGSAKRRNGWSKHKAVSIAEKLEQENLRLESRSRSLLCWKASSGTRQKLSRLKVRTRRPHALLNLVSCGRCLSAKSPR 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1993 1164 Pfam DNA polymerase III, delta subunit 469 627 - -
Sto13g1993 1164 Gene3D - 629 690 - -
Sto13g1993 1164 MobiDBLite consensus disorder prediction 258 272 - -
Sto13g1993 1164 CDD AAA 468 627 - -
Sto13g1993 1164 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 453 801 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Sto13g1993 1164 Coils Coil 1098 1118 - -
Sto13g1993 1164 Coils Coil 763 790 - -
Sto13g1993 1164 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 178 1131 - -
Sto13g1993 1164 MobiDBLite consensus disorder prediction 976 1069 - -
Sto13g1993 1164 MobiDBLite consensus disorder prediction 352 388 - -
Sto13g1993 1164 Gene3D - 445 624 IPR027417 -
Sto13g1993 1164 MobiDBLite consensus disorder prediction 1023 1054 - -
Sto13g1993 1164 MobiDBLite consensus disorder prediction 95 166 - -
Sto13g1993 1164 MobiDBLite consensus disorder prediction 228 249 - -
Sto13g1993 1164 MobiDBLite consensus disorder prediction 360 388 - -
Sto13g1993 1164 SMART AAA_5 486 627 IPR003593 -
Sto13g1993 1164 MobiDBLite consensus disorder prediction 221 277 - -
Sto13g1993 1164 SUPERFAMILY post-AAA+ oligomerization domain-like 698 801 IPR008921 GO:0003677|GO:0006260
Sto13g1993 1164 MobiDBLite consensus disorder prediction 95 110 - -
Sto13g1993 1164 MobiDBLite consensus disorder prediction 189 208 - -
Sto13g1993 1164 CDD HLD_clamp_pol_III_gamma_tau 627 690 IPR045085 -
Sto13g1993 1164 MobiDBLite consensus disorder prediction 1002 1019 - -
Sto13g1993 1164 PANTHER PROTEIN STICHEL-LIKE 3 178 1131 - -
Sto13g1993 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 453 676 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1993 Sto-Chr13 27263626 27270386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1993 453 751 Core DNA Replication Machinery Family AT1G21690 23.529 1.56e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1993 - - gmx:100793832 1616.67