Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1987 ATGAGCTTCTCAACATCGGCTGCGAGCAACATGAAGACCAACGCCGACAATAGAGAAAAAGCGATTGTTCAGTACAGTGCTGACGCTGGGATTTTGGCCGAGTTTGAGCATTCTAGTGTGGCTGGAAAATCGTTCGACTACTCGAGGTCGGTGCTTCACCCTCCGAGATCCGTGTCGGGAGAGAAAATGACGGCTTATTTGTCGAGAATACAGAGAGGGGGTCTCATTCAGCCCTTTGGTTGTATGCTCGCAATTGAGGAAGCCACTCTCAGAATCATCGGCTACAGCGAGAATTGCTTTCAACTGTTGGGTTTAGAGAGACAGATTAACAATTCAAAACAGCTTAATATGGGTCTGGTTGGGGTTGACGTCACAACGCTGTTTACGCCTTCTTCAGGGGCTTCCATCGCAAAAGCAGCGGCGTCGAAGGAAATTTCACTTCTGAACCCGATTTGGGTCTATTCAGGGACAACTCAGAAGCCATTCTATGCTATATTGCATAGGATTGATGTGGGGATTATGATTGATTTGGAGCCTGCACGGTCCAGTGATCCTGCATTGTCACTGGCTGGAGCAGTACAGTCACAGAAGTTGGCTGTTAGGGCAATTTCAAGGTTGCAATCTCTTCCTGTGGGAGATATTGGTGTGTTGTGTGATACTGTTGTTGAAGAAGTGCAGAAGCTTACTGGATATGACAGGGTTATGGTTTATAGGTTCCATGAGGATGATCATGGTGAGGTTGTTTCAGAAATTAGAAGGTCAGATTTGGAGCCCTACTTGGGTTTGCATTATCCTGCCACGGATATCCCTCAGGCTGCTCGCTTCTTATTTCAGCAAAACCGTGTGAGGATGATATGTGATTGCCATGCAGATCCAGTTAAGGTCATTCAGAGTGAAGAATTAAGACAGCCTCTTTGCTTGGTCAATTCAACTCTTCGGTCACCGCATGGATGTCACACACAGTACATGACTAATATGGGCTCTATTGCCTCTCTGGTTATGGCAGTTATAGTTAATGGAAAAGATACAACAAAGCTTTGGGGTTTGCTAGTTTGCCATCACACTTCGCCACGCCATGTGCCTTTCCCTCTTCGCTATGCTTGTGAGTTCCTTGTGCAGGCTTTTGGACTGCAGCTTTACATGGAGATGCAACTAGCATCACAAATGGCAGAGAAGAGAGTACTTAGAACTCAAACCTTGTTATGTGATATGCTTCTCCGCGATGCCCCTTTAGGTATTGTCAACCAATCTCCTAGTATCATGGATCTCGTGAAGTGTGATGGGGCCGCATTGTATTATGGTGGTAATTGTTGGCTGTTAGGCACTACCCCTACTGAGTCACAGGTAAAAGACGTTGCAGAATGGCTACTTAGTGATCATGGGGACTCAACAGGTTTGAGCACTGATAGTTTGGCTGAAGCTGGTTATCCAGGTGCTGCTTTACTGGGAAATGCTGTCTGTGGCATGGCTGCAGCTAGAATTAATATGAGAGATTTCTTGTTCTGGTTCAGATCTCACGCTGCTAAGGAAGTTAAATGGGGAGGAGCCAAGCACCATCCCAAGGACGAAGATGACGGAGGAAGAATAAGCCCGAGGTCATCGTTTAAAGCTTTCCTTGAAGTAGCCAAGAGTAAAAGCTTGCCATGGGAAGTGCCAGAAATCAATGCTATTCACTCATTACAGCTTATAATTAGGGAATCATTTAAAGACATGGAAAACTTTGGTCCTAAGACTCTTAGTTATCCTCAGCATAGGGATGCTGTATTGACTGGGATGGAAGAACTCGGTTCAGTGGCATTTGAAATGGTTAGAATAATTGAGACAGCAACAGTTCCCATTTTTGGAGTCGATTCAGCTGGTTTAATCAACGGACGGAATGCAAAAATTTCTGAATTGACTGGGCTGCAAGCAAATGAGGCTGTGGGAAAATCACTAGTAAAAGAAGTGGTCCATGATGACTCACGTGAAACTGTTGAAAATATTCTAAGCAGAGCTTTGCAAGGTCAGGAGGACAAAAATATTGAGttgaaattaaaacattttggGCGCCATCAAGAAAAGTCAGTCGTATATATACTAGCCAATGCCTGCACAAGTAGGGATTACACAAATTCTGTTGTTGGGGTATCAATTGTGGGCCAAGATATCACATATGAAAAAGTTTTTCAGAACAAATTTATCAAGTTGGAAGGCGATTACAAAGCTATCATCCAGAGTCTCAATCCCTTGATTCCACCCATATTTGCTTCTGATGAGAATGCCTGCTGCTCTGAATGGAATGCAGCCATGGAAAGGCTAACTGGTTGGAAGAGAGAGGAAGTTCTAGGAAAATTGCTTCCAGGGGAAATATTTGGAGGTTTATGTCGACTGAAAGTTCAAGATACACTGACCAATTTTATGATTTCATTGTACAGAGGAATCAGTGGTCAAGATTCTGAGAAGTTctcatttgaattttttaatagaaaagggGAATTTGTAGAGGTTTTCTTAACGGCAAACAAGAGGAATGATGCAAGCGGGAATCCAATTGGCTGTTTCTGCTTCTTGCAGATTGTATCACCAGATCCAAATCAGCCCACTGAAGGTCCCAAGTCAGAGTGTGAGGAAAACATTTCTAAATTTAAGGAGTTGGCTTATATACTTCAAGAAATGAAGAATCCTTTAAATGGTATGCGCTTCACACACAAACTTCTGGAGAATACTGCAGTCTCAGAAAATCAGAAACAATTTCTTGACACTAGTGATGCATGTGAAAGACAGATCATGTCAATTATTGAGGATACTGATTTAGGAAGTATTGACAAAGGCACTGTGAAGCTAAACATGGAAGAATTTCTTTTGGGAAATATATTAGATGCTATTGTCAGTCAAGTCATGATCTTGATAAGAGGAAAAAACTTGAAGCTGTTTCACGAAATTCCTGATGAAATCAAGACACTTACTTTATATGGTGATCAGATTAGACTTCAGATGATCTTGTCTGACATTTTGCTTAATGTGGTAAGCCATACACCATCTGCTAGAGGCTGGGTAGAAATTAAGATTTCACCTGGTTTGAAGATTATACAGGACGGCATTGAATTTATCCATCTGCAGTTCAGAATGACACATGCAGGTCAAGGTATTCCTTCTGCTGTTCTTCAGGATATGTTTGAAGCAGAGAATCAATGGAGTACACAGGAAGGTCTAGGGCTATATATGTCACGGAAAATCCTCAGTAAGATGAATGGTCATGTCCACTATGTTAGAGAACATGACAAGTGCTACTTCCTCATTGATCTTGAACTTAGAACAAGGAAAGAAAAGCAATGGAATTTGCAAGCATAG 3330 0.4204 MSFSTSAASNMKTNADNREKAIVQYSADAGILAEFEHSSVAGKSFDYSRSVLHPPRSVSGEKMTAYLSRIQRGGLIQPFGCMLAIEEATLRIIGYSENCFQLLGLERQINNSKQLNMGLVGVDVTTLFTPSSGASIAKAAASKEISLLNPIWVYSGTTQKPFYAILHRIDVGIMIDLEPARSSDPALSLAGAVQSQKLAVRAISRLQSLPVGDIGVLCDTVVEEVQKLTGYDRVMVYRFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFQQNRVRMICDCHADPVKVIQSEELRQPLCLVNSTLRSPHGCHTQYMTNMGSIASLVMAVIVNGKDTTKLWGLLVCHHTSPRHVPFPLRYACEFLVQAFGLQLYMEMQLASQMAEKRVLRTQTLLCDMLLRDAPLGIVNQSPSIMDLVKCDGAALYYGGNCWLLGTTPTESQVKDVAEWLLSDHGDSTGLSTDSLAEAGYPGAALLGNAVCGMAAARINMRDFLFWFRSHAAKEVKWGGAKHHPKDEDDGGRISPRSSFKAFLEVAKSKSLPWEVPEINAIHSLQLIIRESFKDMENFGPKTLSYPQHRDAVLTGMEELGSVAFEMVRIIETATVPIFGVDSAGLINGRNAKISELTGLQANEAVGKSLVKEVVHDDSRETVENILSRALQGQEDKNIELKLKHFGRHQEKSVVYILANACTSRDYTNSVVGVSIVGQDITYEKVFQNKFIKLEGDYKAIIQSLNPLIPPIFASDENACCSEWNAAMERLTGWKREEVLGKLLPGEIFGGLCRLKVQDTLTNFMISLYRGISGQDSEKFSFEFFNRKGEFVEVFLTANKRNDASGNPIGCFCFLQIVSPDPNQPTEGPKSECEENISKFKELAYILQEMKNPLNGMRFTHKLLENTAVSENQKQFLDTSDACERQIMSIIEDTDLGSIDKGTVKLNMEEFLLGNILDAIVSQVMILIRGKNLKLFHEIPDEIKTLTLYGDQIRLQMILSDILLNVVSHTPSARGWVEIKISPGLKIIQDGIEFIHLQFRMTHAGQGIPSAVLQDMFEAENQWSTQEGLGLYMSRKILSKMNGHVHYVREHDKCYFLIDLELRTRKEKQWNLQA 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1987 1109 Gene3D - 916 1091 IPR036890 -
Sto13g1987 1109 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 939 1096 IPR036890 -
Sto13g1987 1109 TIGRFAM sensory_box: PAS domain S-box protein 604 723 IPR000014 -
Sto13g1987 1109 CDD HATPase_Phy-like 984 1097 IPR044767 -
Sto13g1987 1109 PRINTS Phytochrome signature 128 150 IPR001294 GO:0006355|GO:0009584
Sto13g1987 1109 PRINTS Phytochrome signature 228 247 IPR001294 GO:0006355|GO:0009584
Sto13g1987 1109 PRINTS Phytochrome signature 313 334 IPR001294 GO:0006355|GO:0009584
Sto13g1987 1109 PRINTS Phytochrome signature 413 433 IPR001294 GO:0006355|GO:0009584
Sto13g1987 1109 PRINTS Phytochrome signature 498 517 IPR001294 GO:0006355|GO:0009584
Sto13g1987 1109 PRINTS Phytochrome signature 531 549 IPR001294 GO:0006355|GO:0009584
Sto13g1987 1109 PRINTS Phytochrome signature 601 617 IPR001294 GO:0006355|GO:0009584
Sto13g1987 1109 PRINTS Phytochrome signature 620 635 IPR001294 GO:0006355|GO:0009584
Sto13g1987 1109 PRINTS Phytochrome signature 694 711 IPR001294 GO:0006355|GO:0009584
Sto13g1987 1109 PRINTS Phytochrome signature 714 734 IPR001294 GO:0006355|GO:0009584
Sto13g1987 1109 SUPERFAMILY PYP-like sensor domain (PAS domain) 746 848 IPR035965 -
Sto13g1987 1109 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 985 1095 IPR003594 -
Sto13g1987 1109 Gene3D PAS domain 600 720 - -
Sto13g1987 1109 ProSitePatterns Phytochrome chromophore attachment site signature. 313 322 IPR013516 -
Sto13g1987 1109 CDD HisKA 878 928 IPR003661 GO:0000155|GO:0007165
Sto13g1987 1109 CDD PAS 609 716 IPR000014 -
Sto13g1987 1109 SUPERFAMILY GAF domain-like 193 379 - -
Sto13g1987 1109 SMART HisKA_10 873 937 IPR003661 GO:0000155|GO:0007165
Sto13g1987 1109 PANTHER TWO-COMPONENT HISTIDINE KINASE 15 1103 - -
Sto13g1987 1109 Gene3D - 388 561 IPR043150 -
Sto13g1987 1109 Pfam PAS fold 65 180 IPR013654 GO:0006355
Sto13g1987 1109 SUPERFAMILY PYP-like sensor domain (PAS domain) 604 711 IPR035965 -
Sto13g1987 1109 Pfam GAF domain 213 382 IPR003018 GO:0005515
Sto13g1987 1109 SUPERFAMILY PYP-like sensor domain (PAS domain) 70 184 IPR035965 -
Sto13g1987 1109 SUPERFAMILY GAF domain-like 391 569 - -
Sto13g1987 1109 SMART gaf_1 213 393 IPR003018 GO:0005515
Sto13g1987 1109 PANTHER PHYTOCHROME E 15 1103 - -
Sto13g1987 1109 SMART pas_2 731 801 IPR000014 -
Sto13g1987 1109 SMART pas_2 600 667 IPR000014 -
Sto13g1987 1109 ProSiteProfiles PAS repeat profile. 732 777 IPR000014 -
Sto13g1987 1109 ProSiteProfiles Histidine kinase domain profile. 880 1099 IPR005467 -
Sto13g1987 1109 Gene3D PAS domain 745 856 - -
Sto13g1987 1109 Gene3D PAS domain 69 316 - -
Sto13g1987 1109 Pfam His Kinase A (phospho-acceptor) domain 877 937 IPR003661 GO:0000155|GO:0007165
Sto13g1987 1109 Pfam Phytochrome region 396 570 IPR013515 GO:0006355|GO:0009584
Sto13g1987 1109 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 213 373 IPR016132 -
Sto13g1987 1109 Pfam PAS fold 601 716 IPR013767 GO:0006355
Sto13g1987 1109 Pfam PAS fold 732 851 IPR013767 GO:0006355
Sto13g1987 1109 Gene3D - 194 544 IPR029016 -
Sto13g1987 1109 ProSiteProfiles PAC domain profile. 672 728 IPR000700 -
Sto13g1987 1109 SMART HKATPase_4 985 1099 IPR003594 -
Sto13g1987 1109 CDD PAS 743 851 IPR000014 -
Sto13g1987 1109 PIRSF Phytochrome_conventional 1 1106 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Sto13g1987 1109 ProSiteProfiles PAS repeat profile. 598 669 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1987 Sto-Chr13 27211459 27216368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1987 4 1099 Histidine Kinase Gene Family AT4G18130 63.258 0.0 1467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1987 K12123 - gmx:100808192 1787.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g1987 13 27211459 27216368 Sto13g1987 13 27211459 27216368 ECH