Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1986 ATGAAGCAGAAGGGAGATGCAATGAAGCAGTCTTTTGATATTTCAGCTTCGGGTCCTACCAAGATTCCATCTATAAATATACCTAAAGCAGTGGGGCGCAGTGCTTGGGAGGTTTTACCTGGATCTGATGCCTACCATGCCTCATCAGATGCTAGCCTTTTTTCTAGCTCATTACCTGTTTTGCCACATGAAAAGTTGAACTTGAATGACGCCGAAAATGATTATCAATCTGTGGACGACATCTCGTCTGGCTTTGAAAAGATCCACCAAGATTTAGAGGTTAATGAATCACTTGAAGGTGCTGATATTCATGCAATTGGACCTGTGCTTCCGGATGATGAGGAGGAGCTTTTAGCTGGCATAGCGGATGATTTTGACCTAAGTGGGCTGCCTGGTTCCCTGGAGGACTTGGAAGAATATGATCTTTTTGGTAGTGGTGGAGGTATGGAACTGGAAACTGATCCGCAGGAAAGTCTTAATGTGGGTATGACAAACTTAAGTTTCTCTGATAGTGCAATTAGCAATGGTTTGCCCCATTATTCTTTTCCTAATGGTGTGGGAACTGTTGCTGGGGAACATCCATATGGGGAGCATCCTTCTCGAACATTATTTGTTCGAAATATTAACAGTAATGTGGAGGATTCGGAGTTGAGAGCCCTTTTTGAGCAATATGGTGATATTAGAACCCTCTATACTGCGTGTAAGCATCGGGGGTTTGTAATGATATCCTACTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCTTTACAAAACAAACCACTGCGGCGGAGGAAACTTGACATTCACTTCTCAATACCCAAGGATAATCCATCAGACAAAGATATAAATCAAGGAACATTGGTGGTTTTTAATTTGGATCCGTCTGTTTCAAATGAAGACCTCCGTCAAATATTTGGGGCTTATGGCGAGGTCAAAGAGATAAGGGAAACACCTCACAAGAGGCATCATAAATTTATTGAATTTTATGACGTCAGAGCTGCAGAAGCTGCACTTAAATCATTAAACAGAAGTGACATAGCTGGTAAACGCATAAAACTGGAACCTAGTCGCCCTGGTGGAGCTCGTCGAAATTTGATGCTTCaactaaatcaagaccttgATCAAGATGAATCTCGGAGTTTCCGACATCAAGTGGGTTCACCTGTAGCCAACTCTCCACCTGGTAACTGGTTGCAGTTTAACAGCCCCATTGAACATAAGCCAATGCAATCTATCAGTAATTCTCCTGGTTCTAGGATTATAAGCCCAACAAGCAACAATTTATCAGGATTAGCTTCAATTTTGCAATCGCAGGTATCAAACAATGTGAAGGGTGCTGCTGTTGGTAAAGACTTGGGAAGGAGTAGTCATGGAGAGCAAATATTTTCTAGTACCAATTCATCACATGGAGCTACATTTCAATCACATTCACTTCCAGAGCCAACTTTCAGCCAATATCAAGGAGCTTTGTCTTCATTTGGTCCATCAACTTCAAATGGATCCTCAGTAGAAACCTTGTCTGGGCCACAGTTTCTTTGGGGAAGTTCGAGCTTATACTCAGAGCACACCAAACCTTCACCTTGGCCAAGACCATCTGTGGGGCTTCCATTTACATCAAACGGAAAGGGCCATGCCTTCCCATTCTCCGGTCAAAGTAGTTCCTTAGTTGGTTCATCTCAGCATCATCTCCAACATCATGTTGGCTCCGCTCCATCGGGTGTCCCTTTCGAGAGGCGCTTTGGTTTCCTTCCTGAGTCACCTGAAACCTCATTCATGAATCATGTTGGTTATGGAGGCATCAACTTGGGGCACAATGATGGAAATTACATGGTTAACATGGGTGGGTCTGTCAATGCTGGCATTACTATTCCAAGGAATATGTCTGAAAATGTTCAATCAAACTTTAGAATGAGATCTTCTCCAAGGCTTAGCCCTGTGTTTTTGGGTAATGGTCCTTTCCCAGGGCTTCCACCTACCACCATGGACGGTTTGACTGACCGTGGGCGGAGCAGAAGGGTAGAGAATAATGGCAACCAAGTTGATAGCAAGAAGCAATTTCTGCTCGACTTGGATAAGATTAAAAGTGGTGAAGATAATAGGACTACTTTAATGATAAAGAATATCCCAAATAAATACACTTCAAAAATGTTACTAGCCGCCATTGACGAAAATCACAGGGGTACCTATGATTTTCTCTATCTGCCTATTGATTTTAAGAATAAATGCAATGTGGGCTATGCATTTATCAACATGCTGTCACCCTCTCTTATTATTCCATTCTATGAGACATTCAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAGAAAGTTGCTTCTTTGGCTTATGCTCGAATCCAAGGAAAATCCGCCCTAGTGAGCCACTTCCAAAATTCAAGTTTGATGAATGAAGATAAGCGCTGCCGCCCTATTCTTTTTCACTCAGAGGGTCCTGAAGCTGGTGATCAGATCGTACAAGAACATCTCCCTTCCAATAGTCTCATCAATATCCAGGTACTTAGGTCAATCGAGTCACATTCAACTGACTTTTCTGGAAGCCCCCCCATGGATACCCCTCCTGTGAACTTGGAGACTAGTTAG 2601 0.4268 MKQKGDAMKQSFDISASGPTKIPSINIPKAVGRSAWEVLPGSDAYHASSDASLFSSSLPVLPHEKLNLNDAENDYQSVDDISSGFEKIHQDLEVNESLEGADIHAIGPVLPDDEEELLAGIADDFDLSGLPGSLEDLEEYDLFGSGGGMELETDPQESLNVGMTNLSFSDSAISNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQDLDQDESRSFRHQVGSPVANSPPGNWLQFNSPIEHKPMQSISNSPGSRIISPTSNNLSGLASILQSQVSNNVKGAAVGKDLGRSSHGEQIFSSTNSSHGATFQSHSLPEPTFSQYQGALSSFGPSTSNGSSVETLSGPQFLWGSSSLYSEHTKPSPWPRPSVGLPFTSNGKGHAFPFSGQSSSLVGSSQHHLQHHVGSAPSGVPFERRFGFLPESPETSFMNHVGYGGINLGHNDGNYMVNMGGSVNAGITIPRNMSENVQSNFRMRSSPRLSPVFLGNGPFPGLPPTTMDGLTDRGRSRRVENNGNQVDSKKQFLLDLDKIKSGEDNRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKSALVSHFQNSSLMNEDKRCRPILFHSEGPEAGDQIVQEHLPSNSLINIQVLRSIESHSTDFSGSPPMDTPPVNLETS 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1986 866 SUPERFAMILY RNA-binding domain, RBD 198 361 IPR035979 GO:0003676
Sto13g1986 866 Pfam RNA recognition motif 2 701 797 IPR007201 -
Sto13g1986 866 CDD RRM2_MEI2_like 285 355 - -
Sto13g1986 866 Gene3D - 190 284 IPR012677 -
Sto13g1986 866 MobiDBLite consensus disorder prediction 846 866 - -
Sto13g1986 866 Gene3D - 285 383 IPR012677 -
Sto13g1986 866 CDD RRM3_MEI2_like 704 789 IPR034454 -
Sto13g1986 866 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 359 IPR000504 GO:0003723
Sto13g1986 866 PANTHER PROTEIN MEI2-LIKE 2 9 857 - -
Sto13g1986 866 MobiDBLite consensus disorder prediction 455 505 - -
Sto13g1986 866 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 267 IPR000504 GO:0003723
Sto13g1986 866 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 353 IPR000504 GO:0003723
Sto13g1986 866 MobiDBLite consensus disorder prediction 458 505 - -
Sto13g1986 866 CDD RRM1_MEI2_like 200 276 IPR034453 -
Sto13g1986 866 SMART rrm1_1 703 779 IPR000504 GO:0003723
Sto13g1986 866 SMART rrm1_1 202 270 IPR000504 GO:0003723
Sto13g1986 866 SMART rrm1_1 287 355 IPR000504 GO:0003723
Sto13g1986 866 SUPERFAMILY RNA-binding domain, RBD 703 787 IPR035979 GO:0003676
Sto13g1986 866 PANTHER RNA RECOGNITION MOTIF-CONTAINING 9 857 - -
Sto13g1986 866 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 274 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1986 Sto-Chr13 27204747 27209695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1986 196 394 Eukaryotic Initiation Factors Gene Family AT1G71770 25.112 2.70e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1986 - - gmx:100800877 1419.83