Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1963 ATGCCGGTTGTTAGAGGCCCATTGGGGGTACAATTGCAGGAAGTGGGGTTTAGTTTGGGTAAAGGCGTGGAGTACTTGAGCTATATGGGTGGTGGTCCACTCTACACCGTCTATCACCGGCAAGCTACTCCGACTACGACTCCGGCGGCCACGGTGGTTGAAGTCGACGTTTCTTGCCTGCTCTGCTTCTCGGTTCCGTGCTCTGCTTCTCGGTTCCTCTCTGCTATGCACGCTTCGGGAGAAAAGATCGAGATGGAATTGGTGAAGGACGCGGGTTCAAGACAGGTCACATTCTCGAAGCGTCGGAACGGCCTCTTCAAGAAGGCGAACGAGCTCGCGATCCTGTGCGGCGCGGAGGTCGCCGTCGTGGTGTTCTCGCCGGGCGGCAAGCCCTTCTCCTTCGGCCACCCGACCGTCGATGCGGTGGCTCAGAAGTTTCTGGACTACCTCGAGCCCACGGCGGCGGAATTAGGGGGGCCCTCCTCCAAcgctccttcttcttcctcctctcggAAGAGAGCTTCCGGAAAGGTGAAGACGCTGAATAAGCGACTGGAGAGACTGACGAAAGAGCTGGAGAAGGAGAAGATTAAGGGCGAGATGCTGGATAGAGCCATcgaagaaggaaagaagaagctCATGGATGGGTCTGGGCCTGGGCCTGGACTTGGGTCTGGGCCTGAGGGTTTGGGTAAGTTGGAGAGAATGAAGAGGTCGCTGGAGAAGCTGAGGGGTGATGTGAAGCTAAGGAAGAAAGAAATGGAGGCGGCGGCGTCGATGATGATACTGGCGGAGAAAGCTGTGGAGAAAGACGACGCAGAAAAAGCGAGTTGCTAA 837 0.5376 MPVVRGPLGVQLQEVGFSLGKGVEYLSYMGGGPLYTVYHRQATPTTTPAATVVEVDVSCLLCFSVPCSASRFLSAMHASGEKIEMELVKDAGSRQVTFSKRRNGLFKKANELAILCGAEVAVVVFSPGGKPFSFGHPTVDAVAQKFLDYLEPTAAELGGPSSNAPSSSSSRKRASGKVKTLNKRLERLTKELEKEKIKGEMLDRAIEEGKKKLMDGSGPGPGLGSGPEGLGKLERMKRSLEKLRGDVKLRKKEMEAAASMMILAEKAVEKDDAEKASC 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1963 278 SMART madsneu2 78 137 IPR002100 GO:0003677|GO:0046983
Sto13g1963 278 ProSiteProfiles MADS-box domain profile. 78 138 IPR002100 GO:0003677|GO:0046983
Sto13g1963 278 SUPERFAMILY SRF-like 81 152 IPR036879 GO:0003677|GO:0046983
Sto13g1963 278 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 82 271 - -
Sto13g1963 278 MobiDBLite consensus disorder prediction 159 175 - -
Sto13g1963 278 MobiDBLite consensus disorder prediction 157 182 - -
Sto13g1963 278 MobiDBLite consensus disorder prediction 212 236 - -
Sto13g1963 278 PRINTS MADS domain signature 80 100 IPR002100 GO:0003677|GO:0046983
Sto13g1963 278 PRINTS MADS domain signature 100 115 IPR002100 GO:0003677|GO:0046983
Sto13g1963 278 PRINTS MADS domain signature 115 136 IPR002100 GO:0003677|GO:0046983
Sto13g1963 278 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 89 134 IPR002100 GO:0003677|GO:0046983
Sto13g1963 278 Gene3D - 91 155 IPR036879 GO:0003677|GO:0046983
Sto13g1963 278 Coils Coil 233 253 - -
Sto13g1963 278 Coils Coil 171 205 - -
Sto13g1963 278 PANTHER MADS BOX PROTEIN 82 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1963 Sto-Chr13 27024570 27026829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1963 82 266 Type I MADS-box Gene Family AT2G34440 38.378 2.76e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto13g1963 SRF-TF 5.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1963 - - dzi:111281185 156.377