Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1955 ATGGTTACCTTCAGGTTCCATCAGTACCAGGTGGTTGGGAGAGCTCTCCCTACGGAAGCAGATGAGCACCCTAAGATTTACCGCATGAAGCTCTGGGCCACAAACGAGGTTCGCGCCAAATCGAAGTTCTGGTATTTTCTGAGGAAACTGAAGAAGGTCAAGAAGAGTAACGGTCAAGTGCTTGCTATCAATGAGATTTTTGAGAAGAACCCAACAAAAATCAAGAACTATGGTATTTGGTTGCGGTATCAGAGTAGGACTGGCTATCACAACATGTACAAGGAGTACCGTGACACCACTCTAAACGGCGCGGTTGAGCAGATGTACAATGAGATGGCTTCCCGCCACAGGGTCCGCTTCCCTTGCATTCAAATTATTAAGACTGCCACCATCCCAGCTAAGCTCTGCAAAAGAGAGAGCACCAAGCAGTTCCACAACTCCAAAATTAAGTTCCCATTGGTTTTCAAGAAAGTCAGGCCACCCACAAGGAAGCTAAAGACTACATACAAGGCATCAAGGCCCAATTTGTTTATGTAA 537 0.4618 MVTFRFHQYQVVGRALPTEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRFPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1955 178 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 7 128 IPR023573 GO:0003735|GO:0005840|GO:0006412
Sto13g1955 178 PIRSF Ribosomal_L18a 1 178 IPR021138 GO:0003735|GO:0005840|GO:0006412
Sto13g1955 178 Gene3D - 1 70 - -
Sto13g1955 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 138 178 - -
Sto13g1955 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 137 - -
Sto13g1955 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 138 178 IPR028877 -
Sto13g1955 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 137 IPR028877 -
Sto13g1955 178 Gene3D - 71 144 - -
Sto13g1955 178 SUPERFAMILY RplX-like 71 146 - -
Sto13g1955 178 Hamap 50S ribosomal protein L18Ae [rpl18a]. 6 69 IPR028877 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1955 Sto-Chr13 26969056 26971159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1955 1 178 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 91.573 4.39e-124 346
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g1955 13 26969056 26971159 Sto13g1955 13 26969056 26971159 ECH