Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1900 ATGGATCCAGAAAGTTCTGAAAATGAGGCATATGCGACGTCTGTTGGAGATGTTAATGATAACTTTGATGAGGAATCGGATAAAGTTGTTTTATATGGAGGTGAATCATCTGATGGTGAGGTTATTGGAGAATGCGGTATTGATAGCACAACTATAACAGGGCTGGAGGTAGGTTTGGCAGGTTTCTCCGAGAAAATAACCAACCTGAGGATCTTTATGATGCGTCTAGCGGCTACTATGGAGAGTGAATTTGAGGCTTTAGGGTCGGAGGAAGATCGCATGGGACTTGAATCTATTGAGAAGGGTCTTGAATTTGATCTTCTATCCGGGATATTGGATTCAGAGGTTAGAGAATTGGATAAGTTCTTGTACACACTTCAAAATGAGATTGCTGATGCTAGAGAGAGGGTATCTTCGTGCACCCACATGGGAGAAAGTTTCATGGAGATGAAAGCAAAGTTGTTTGATTTCGAACAGCTCTTGAAGCAGTCTGAAGAGCAGTTTTCTGTTATAGCAATGCAATCAGCTAATTTTCAGAAGAATTTGTCGTCTTTTAAGAGGGAAGAGAATGGGAAAGGCGAAGTGGGTAAAATCGTCCAAGAGGATGATCAATCCTTGAACATGAATGCAGAGATAAATATGCAAACTGCTGAGCAACAAAGAAATATTCTGAGGATGCTAGAGAAATCTATGGCAAGAGAAATGGATCTTGAGAAAAATATGAATGACTCAATACAGATTGAAGAAGAGCTAAGTCTAAGAATATCTTCTTTAGAACAAGAGCTAGTTCACACAGTGGAAGAAGCAACAGATGTTTGGGAAAGATGGCTCGAGGCTGATAGTGCATGTCAGATCCTGATTGGAGTTTCAAGAGACATACTCGGTAGACTCCAGATTTCTCATTTTAATCTGAATGGTTTAATGCAGCGTGAATCTGAGCTCAGAGCTAAATTAGTTCTTGCCAATTCTGAGGCCTCCACTTTAACTGAAAAGGTGAATTCACTTGAGAAGCAGCTAAAAGAATCTGAATTTCAGCTACTGAACACAAAGGTCtctgctgatgaatatcagAAGCAATATAATGTTTTGTGTTCGGATGTGAGAGATATGGAAAATCTCATTGTAAAACTGAAAGAAAATGTATCAAATGCAGAAAGTAGGGCTAATAGTGCAGAAACTGAGAATAAATTATTGGCAGAGAGTAATACTAAACTCAATCAAGAGCTTGCTCTTTTGAAAGATGGTGGTGATGCCACTAAGAGGGTGGATTTGCTGGAGAGTCAGCTTAAGGAATCTGATCTAAGGCTACAGCATGCAGTAGCATCTGCTGAAGCTAGTCAGGAGAAACAAAGTATGTTATATTCCACAATTGAAGATATGGAAAATGTTATTAAGGATCTTAAGTCAAATGTTTCTAAAGCTGAAAGTCGAGCTGACAATTCAGAGGAGAAGTGGATTGCATTATCTGAATCTAATGTTGAGTTAAATGAGGAAATAAGCTTTTTGAGGAATAGATTGGAGTGTTTGGAGGAATCTCTACACCAAGTGGAAGAAGAGAAAGTGGCAACTGCAAAAGACATTGGCCTGCACAtcatgaattttaaaactttggtCACTCAGCTTGCTGTTGAGAGAGAGCGTCTCAATAAGAAGGTATCTTCCTTAgcatttgaaaacaaaattttggtagtgaagctaGAGCAAACAAATAAGGCTCCTTCCCAAGGTACTAATGATTTTAACAGAGACAATGGTTCTTCTGCTAGAGATATTAAGGAAGAAGTTTGCACGACTCCAGTCCCTGGTCATAAGGTGGACAAGACTTGGGAAAATTTACCTGCAGATGATTATGAAATGAAGCCTGCAGATTTTGTGCCTGATAGTGGGACTGTGAGAAGAGTAGATGTTGGAGTTCTTAATTTCAAGCACTTTCTTATAGCAATACTTGTCTTACTGGTTTCAGCTACGACATATTTGTTTTTGAACGATGTAAATTCTGATTCGTTTTCGAATTCCCTTTCCCATTCAACCATGGCTCACCGCTTCTCTACCTTTCAACTCCCGGTCCTTTTTTCCCCCGAAGATGAATTTGATGAATCCGATCCCGATGAGCAGGTTTCTGATATCCCATCACTCGCTCCCCATGATCATTTTTGCTCCAACCCCTTCGCGACTGTGTCCTTCGACCATTTGAGCAACCATTCAAACTGGTACTCCGATTCGGACTCCGATTCGGCGAGTTGCTTTGTCACGGATCTTTTCGAAAATCGCTCATCTGAGAACTCTTGCCGTCGCTGCGATGATAGTTCTGATATTAATCCGTTTTCGGGGGTTCTTTCCGATGGTCACGGGGGAGAAGGATCGAGTTATGCGGAGATTGAAGATGAGGGGGTTTCTGCAGTGCGTGAGATTCCGGGCTCAGAAAGGGTTCGTTCGCACACGGATGGTCTTCGAGTTGTCGGGTTCAGTTCTGATTCGGATTCAAATGTTGATGATGAGCTTGATAGGGCTATAGAATTCAGTTCTGGTGAAAATGATGGCAATAGGATTAGTGACTTTGACGATTTGGATGCTCGTTTATGTTGGGACAACCTTCGTTTGGAGGATCAGAGGACCctcaatgaaaattttgaatggGAGGAGTTAGAGGAAGGAGTCAATGATGGAGAAGACTTGAGCGTGGTGATTGGTGAGGTTGATGATCAGTCAGTAGCATCTGGATTTTCTTATGCAGAAGAGCCTGGGGAAGAGGCATTAAGATACCTTGAATGGGAAATTCTGTTAGCGGTCAACAATTTGGAGAGGATTTCCAGCTTGGAACATGATGCTAATGTATCTTCCTTGATAACTATACGGGATGATGTTTATATGTATACAGCTGATTATGACTTATTTTTTGGGCGATTCCTGGAAAATGAGAGCTCCTTCAAGGGTAGCCCTCCCACAGCCAAAAGTTTTATGGAGAATCTTCCTGTAGTAGAATTGACAATGGAGGACTTGCAGGGAGAAAATGTAGCTTGTGCCGTTTGCAAAGATGAGATCCTATTGAAGGAGAAGGTGACAAGACTTCCCTGCTCACACTTTTATCATGGGGATTGCATTAGGCCATGGCTGAGCATTCGAAATACATGCCCTGTTTGTCGGTTTGAGTTGCCCACAGATGATCCTGATTACGAGCAGAGGAAGAATCAGGGAACTGCTCATGATCAATTAGAGTTTGCAGTGTAA 3228 0.4055 MDPESSENEAYATSVGDVNDNFDEESDKVVLYGGESSDGEVIGECGIDSTTITGLEVGLAGFSEKITNLRIFMMRLAATMESEFEALGSEEDRMGLESIEKGLEFDLLSGILDSEVRELDKFLYTLQNEIADARERVSSCTHMGESFMEMKAKLFDFEQLLKQSEEQFSVIAMQSANFQKNLSSFKREENGKGEVGKIVQEDDQSLNMNAEINMQTAEQQRNILRMLEKSMAREMDLEKNMNDSIQIEEELSLRISSLEQELVHTVEEATDVWERWLEADSACQILIGVSRDILGRLQISHFNLNGLMQRESELRAKLVLANSEASTLTEKVNSLEKQLKESEFQLLNTKVSADEYQKQYNVLCSDVRDMENLIVKLKENVSNAESRANSAETENKLLAESNTKLNQELALLKDGGDATKRVDLLESQLKESDLRLQHAVASAEASQEKQSMLYSTIEDMENVIKDLKSNVSKAESRADNSEEKWIALSESNVELNEEISFLRNRLECLEESLHQVEEEKVATAKDIGLHIMNFKTLVTQLAVERERLNKKVSSLAFENKILVVKLEQTNKAPSQGTNDFNRDNGSSARDIKEEVCTTPVPGHKVDKTWENLPADDYEMKPADFVPDSGTVRRVDVGVLNFKHFLIAILVLLVSATTYLFLNDVNSDSFSNSLSHSTMAHRFSTFQLPVLFSPEDEFDESDPDEQVSDIPSLAPHDHFCSNPFATVSFDHLSNHSNWYSDSDSDSASCFVTDLFENRSSENSCRRCDDSSDINPFSGVLSDGHGGEGSSYAEIEDEGVSAVREIPGSERVRSHTDGLRVVGFSSDSDSNVDDELDRAIEFSSGENDGNRISDFDDLDARLCWDNLRLEDQRTLNENFEWEELEEGVNDGEDLSVVIGEVDDQSVASGFSYAEEPGEEALRYLEWEILLAVNNLERISSLEHDANVSSLITIRDDVYMYTADYDLFFGRFLENESSFKGSPPTAKSFMENLPVVELTMEDLQGENVACAVCKDEILLKEKVTRLPCSHFYHGDCIRPWLSIRNTCPVCRFELPTDDPDYEQRKNQGTAHDQLEFAV 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1900 1075 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 968 1054 IPR013083 -
Sto13g1900 1075 PANTHER WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 317 660 IPR040060 -
Sto13g1900 1075 PANTHER WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 15 318 IPR040060 -
Sto13g1900 1075 Pfam Ring finger domain 1007 1048 IPR001841 -
Sto13g1900 1075 Coils Coil 318 345 - -
Sto13g1900 1075 ProSiteProfiles Zinc finger RING-type profile. 1007 1048 IPR001841 -
Sto13g1900 1075 Coils Coil 207 227 - -
Sto13g1900 1075 SMART ring_2 1007 1047 IPR001841 -
Sto13g1900 1075 Coils Coil 457 484 - -
Sto13g1900 1075 Coils Coil 248 268 - -
Sto13g1900 1075 Coils Coil 492 526 - -
Sto13g1900 1075 PANTHER WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 15 318 IPR039976 -
Sto13g1900 1075 PANTHER WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 317 660 IPR039976 -
Sto13g1900 1075 Coils Coil 367 408 - -
Sto13g1900 1075 MobiDBLite consensus disorder prediction 1 21 - -
Sto13g1900 1075 SUPERFAMILY Tropomyosin 416 516 - -
Sto13g1900 1075 SUPERFAMILY RING/U-box 995 1054 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1900 Sto-Chr13 26435711 26443975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1900 816 1063 C3H Transcription Factor Family AT3G02340 39.850 9.09e-45 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1900 - - gmx:100780055 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g1900 13 26435711 26443975 Sto13g1900 13 26435711 26443975 ECH