Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1880 ATGCTTAAGACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTGGAAGTAAGCAGGCCTGGGAAAGAGCTTGAGAATAGCTACCGTGAGTACTTGAAGCTCAAGGGCAGGTTTGAATCTCTCCAAAGGACTCAGAGAAACCTTCTAGGGGAGGACTTGGGCCCACTAAATACCAAAGAGCTTGAGCAGCTTGAGCGACAACTCGATTCCTCCCTCAAGCAAGTCAGGTCCACTAAgACCCAGTTTATGCTAGACCAACTATCCGAACTTCAAAACAAGGAACAGCTATTGGTAGAAGCAAACAGGTCTTTGACTATGAAGCTGGAAGATATGAATGCAAGAAACCATTATCGAGAATCATGGGAAGCAAGTGGTGATCAAGCCATGTCTTATGCTGCACACACTTCTCACTCTCACCCCATCTTTCACCCTCTCGACTGCAATCCCTCTTTGCAGATGGGGTACAATCCTATAGTTTCTGATCAGATAGGTGGTACAAGTCAAGCCCAACAAATGAATGGATTTATTCCAGGATGGATGCTGtga 549 0.4536 MLKTLERYQKCSYGAVEVSRPGKELENSYREYLKLKGRFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLSELQNKEQLLVEANRSLTMKLEDMNARNHYRESWEASGDQAMSYAAHTSHSHPIFHPLDCNPSLQMGYNPIVSDQIGGTSQAQQMNGFIPGWML 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1880 182 Coils Coil 62 82 - -
Sto13g1880 182 ProSiteProfiles K-box domain profile. 25 115 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto13g1880 182 Pfam K-box region 24 109 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto13g1880 182 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 2 168 - -
Sto13g1880 182 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1880 Sto-Chr13 26271750 26275448 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1880 1 182 MADS-box Gene Family AT5G15800 63.000 3.89e-78 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1880 K09264 - gmx:100785322 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g1880 13 26271750 26275448 Sto3g1642 3 12426169 12434143 ECH
Sto13g1880 13 26271750 26275448 Sto12g0991 12 6169083 6173556 ECH
Sto13g1880 13 26271750 26275448 Sto13g1880 13 26271750 26275448 ECH
Sto6g2918 6 36405207 36414639 Sto13g1880 13 26271750 26275448 ECH