Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1877 TTGGGGTCGGAGAAATTAGGGTGGAAGAAAGGGCCTTGGAGTGTTGAAGAAGATAAATTGCTTTGTGAATATGTGAGCTTGCATGGCGAGGGAAGATGGAGTTCTGTCTCTAAGTTTACagGGTTAAACCGGAGTGGGAAAAGCTGCAGGTTGAGATGGGTGAACTATTTGAAGCCAGGACTGAAGAAAGGCCAATTAACACCTCAAGAACAAGCCATCATTGTTGAACTCCATGCAGTCCTTGGCAACAaGTGGTCAACAATAGCAAAATACTTGGCCGGGAGAACAGACAATGAGATAAAGAACTACTGGAGAACTCACCACAAGAACAAAGACAGAAGCTCTTCTTCTCGGAGAAACAAAAGGCAAGACTACCACAAGCGAAGACCGAAGAAGCTGCAACTCCAACCGCCACCTCAACAATatcatgatgatgataataatgttAATAATAACAACATTAATCATCACGAACCAAACTTTTCTGATATCACCAACTTCACGACCATAGAAGACGACCAATATTATAATAATGATTATTTGGCTAATTATTTCATGAATAATCAAGAGCAGTACTGGGGAAGTGCAGCATTAGAAGATGAAGGGTTATGGATTAGCTTATGGAATCTGGAAGACACAGAAGGTCATGCAAGATGTGGAACCATGCACAACCAACACACCACTAATAGTAATGCAACTTCTTCTTTCcatgatatatatcatcatgTCCGATAA 735 0.3932 LGSEKLGWKKGPWSVEEDKLLCEYVSLHGEGRWSSVSKFTGLNRSGKSCRLRWVNYLKPGLKKGQLTPQEQAIIVELHAVLGNKWSTIAKYLAGRTDNEIKNYWRTHHKNKDRSSSSRRNKRQDYHKRRPKKLQLQPPPQQYHDDDNNVNNNNINHHEPNFSDITNFTTIEDDQYYNNDYLANYFMNNQEQYWGSAALEDEGLWISLWNLEDTEGHARCGTMHNQHTTNSNATSSFHDIYHHVR 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1877 244 SMART sant 62 110 IPR001005 -
Sto13g1877 244 SMART sant 9 59 IPR001005 -
Sto13g1877 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Sto13g1877 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Sto13g1877 244 CDD SANT 12 57 IPR001005 -
Sto13g1877 244 Gene3D - 65 136 - -
Sto13g1877 244 CDD SANT 67 107 IPR001005 -
Sto13g1877 244 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 5 225 IPR044676 GO:0003700|GO:0006355|GO:0043565
Sto13g1877 244 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Sto13g1877 244 Pfam Myb-like DNA-binding domain 64 107 IPR001005 -
Sto13g1877 244 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Sto13g1877 244 Gene3D - 8 63 - -
Sto13g1877 244 ProSiteProfiles Myb-like domain profile. 9 57 IPR001005 -
Sto13g1877 244 MobiDBLite consensus disorder prediction 111 133 - -
Sto13g1877 244 SUPERFAMILY Homeodomain-like 7 104 IPR009057 -
Sto13g1877 244 PANTHER MYB TRANSCRIPTION FACTOR 5 225 - -
Sto13g1877 244 MobiDBLite consensus disorder prediction 104 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1877 Sto-Chr13 26245912 26247841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1877 7 220 MYB Transcription Factor Family AT3G30210 50.228 1.29e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto13g1877 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1877 K09422 - gmx:100785540 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g1877 13 26245912 26247841 Sto13g1877 13 26245912 26247841 ECH