Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1830 ATGGACTACACCACTGTGCCCGAATTGCAGCCAAATCCAACACCCACGCTTTTTCCTTCTTACCCTCCTCCTTCTGTACCCACTTACTTTCCCCCAACCTACCCTACCCATTACCAATCTTACcctcaaaaccctaacccttctTCTTCCGCTGACCCCCAATCTTCCCTTCCGTTAACCAATGAGGTCCATGCTAGCGCTGCTCTCGAACCCCCGCTTAACCCTCCCGGTGTCGATTCCTATGTCCCCTTGGTCTCCAATTCAGTTCCGGTTAGCCATCTCGTTCATGAAGCCCAACCCAATTACGCGCCGTATGCTCACAACGCCGTGGTGGATTCGAGCTCGTTGGTGGCGGCTTCTGGGTACTATTATGATCCGAATGCGCAGAATTGGGCGGCCAGGGAGGCCGTGAGGCAGTACGGGTCGGACCCGGTTGTGTATGGAGCTGCAATGGAAGGGATGGTTATGAAGTTTGGGATTTTGATTGCAGAGAAAGAGGTTGAATTGGAAATTGGAATGAAGTCTATTGTTGAATGTGATCAAATGTTGTATAATCATCCCTTAGCCTTTCCTATGCCTTCAACTGGGTCAGAGCAATTAGCTGTAGCGAATCCCAGCGCCACTTGGTGGGCCAACGCCACGGctcaacctcaacctcaaccCCAACCTCATGCTAATGGAGCATGGAAGAAATATCCAAAGAAGGTGAAAGCTAAGATTGTCCAATCTGCATATTGTGAAGTTTGCAAGGTAGATTGCACCAGCAAAGATGTTCTGGATCAACATAAATTAGGGAAGAAGCACAAGAAGAACTTGGAGAAACTCAGAGAAGCATTAAAGCCACCTCCAGTTCCTCCCCCTGTGTCATCAAATCCTGTCATAGGACCTCAACCACAGGCGGAAAAGGGCAAATCTGGCGGTAAGAGTAAGAATAAGAGTAAAAGGAAAGCAAAGGAAACACCGGAGGATTTggagaggaagaaaaagaaggttCTAGAAGGTGGGGCAGCAGCAGAAGCTGTTAAAATATGTGGTGTTTGTAATGTAATCTGTAATAGTGAgacagtttacagttttcatcTTGCTGGACAAAAGCATATTGCTATGCTGAAGAAGCAAGCATCTGAACATAATATTGCTGGctga 1146 0.4415 MDYTTVPELQPNPTPTLFPSYPPPSVPTYFPPTYPTHYQSYPQNPNPSSSADPQSSLPLTNEVHASAALEPPLNPPGVDSYVPLVSNSVPVSHLVHEAQPNYAPYAHNAVVDSSSLVAASGYYYDPNAQNWAAREAVRQYGSDPVVYGAAMEGMVMKFGILIAEKEVELEIGMKSIVECDQMLYNHPLAFPMPSTGSEQLAVANPSATWWANATAQPQPQPQPHANGAWKKYPKKVKAKIVQSAYCEVCKVDCTSKDVLDQHKLGKKHKKNLEKLREALKPPPVPPPVSSNPVIGPQPQAEKGKSGGKSKNKSKRKAKETPEDLERKKKKVLEGGAAAEAVKICGVCNVICNSETVYSFHLAGQKHIAMLKKQASEHNIAG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1830 381 SUPERFAMILY beta-beta-alpha zinc fingers 340 373 IPR036236 -
Sto13g1830 381 MobiDBLite consensus disorder prediction 277 326 - -
Sto13g1830 381 MobiDBLite consensus disorder prediction 1 57 - -
Sto13g1830 381 Pfam Zinc-finger of C2H2 type 343 366 - -
Sto13g1830 381 Pfam Zinc-finger of C2H2 type 245 268 - -
Sto13g1830 381 SMART ZnF_U1_5 339 373 IPR003604 GO:0003676|GO:0008270
Sto13g1830 381 SMART ZnF_U1_5 241 275 IPR003604 GO:0003676|GO:0008270
Sto13g1830 381 MobiDBLite consensus disorder prediction 279 293 - -
Sto13g1830 381 Gene3D Classic Zinc Finger 228 275 - -
Sto13g1830 381 Gene3D Classic Zinc Finger 310 374 - -
Sto13g1830 381 PANTHER ZINC FINGER RNA-BINDING PROTEIN 189 377 - -
Sto13g1830 381 MobiDBLite consensus disorder prediction 12 31 - -
Sto13g1830 381 SUPERFAMILY beta-beta-alpha zinc fingers 236 276 IPR036236 -
Sto13g1830 381 MobiDBLite consensus disorder prediction 32 57 - -
Sto13g1830 381 PANTHER - 189 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1830 Sto-Chr13 25679168 25681574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1830 237 370 C2H2 Transcription Factor Family AT5G61190 31.852 5.67e-13 68.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g1830 13 25679168 25681574 Sto13g1830 13 25679168 25681574 ECH