Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1796 ATGGATGGACCAACTGGCCGTGGTGGCACTGGTGTGGACATGTTTTTGCCAAATTATAAGTTGGGAAAAACACTTGGTATTGGATCCTTCGGTAAGGTAAAAATTGCGGAGCATGTATTGACTGGTCATAAAGTTGCCATCAAGATCCTTAACCGCCGTAAGATAAAGAACATGGAAATGGAAGAAAAAGTgagaagagaaatcaaaattctAAGATTGTTCATGCATCCTCACATTATACGACTTTATGAAGTCATAGAAACTCCAACAGACATATATGTTGTTATGGAGTATGTAAAATCTGGAGAGCTCTTTGACTACATAGTAGAGAAGGGTAGGCTTCAAGAAGATGAAGCCCGTAATTTTTTTCAGCAGATCATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCACAGAGATCTGAAGCCTGAGAATTTACTGTTGGACTCCAAATGCAATGTCAAGATTGCTGATTTTGGTTTGAGCAACATCATGCGTGATGGTCACTTTCTTAAGACTAGTTGTGGGAGTCCAAACTATGCTGCTCCAGAGGTTATCTCTGGAAAGTTGTATGCTGGACCTGAAGTGGATGTTTGGAGCTGTGGTGTAATTTTATATGCTCTTCTTTGTGGTACCCTTCCTTTTGATGATGAGAACATCCCAAACCTCTTCAAGAAGATAAAGGGTGGGATATACACTCTTCCTAGTCATCTATCACATGGTGCTAGAGATTTGATACCAAGGATGCTTGTAGTCGATCCCATGAAGAGGATGACCATACCTGAGATCCGGCAACACCCATGGTTCCAGGCTCATCTCCCGCGTTATCTGGCAGTGCCACCACCAGATACTACTCAACAAGCCAAAAAGATTGATGAGGAGATTCTTCAGGAAGTGGTTAAAATGGGATTTGACAGGAATCAGTTGGTTGAGTCTCTTCGCAACAGGATACAAAATGAGGGTACTGTGGCATACTATTTATTATTGGACAATCGTTTCCGTGTGTCGAGTGGCTATCTTGGTGCTGAGTTTCAAGAGATTATGGATACTGGTTTCAACCGTATGCATTCCAGTGAAATGGCCGCTCCAGCTGTTGGGCACCGCATTCCTGGGTATATGGATTGTCAAGGAGTTGGATTGAGACCACAGTTCCCAGTTGAAAGAAAATGGGCCCTTGGGCTTCAGTCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTCTGCAAGAATTGAATGTGTGCTGGAAGAAGATTGGACACTATAACATGAAGTGCAGGTGGGTTGCTGGTATTCTGGGTCATCATGATTCAAACATTATTGAGAACGACTCTGTTTCTAAGTCAAATGTAGTCAAGTTTGAAGTGCAgCTTTACAAAACCCGGGAAGAGAAGTATCTGCTTGATCTGCAAAGGGTCCAGGGCCCACAGTTTCTGTTCTTGGATCTCTGTGCTTCTTTCCTTGCACAGCTTCGTGTCCTCTAG 1497 0.4282 MDGPTGRGGTGVDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSHGARDLIPRMLVVDPMKRMTIPEIRQHPWFQAHLPRYLAVPPPDTTQQAKKIDEEILQEVVKMGFDRNQLVESLRNRIQNEGTVAYYLLLDNRFRVSSGYLGAEFQEIMDTGFNRMHSSEMAAPAVGHRIPGYMDCQGVGLRPQFPVERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGHYNMKCRWVAGILGHHDSNIIENDSVSKSNVVKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCASFLAQLRVL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1796 498 SUPERFAMILY Protein kinase-like (PK-like) 16 288 IPR011009 -
Sto13g1796 498 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Sto13g1796 498 CDD AMPKA_C 389 495 - -
Sto13g1796 498 SMART uba_6 294 331 IPR015940 -
Sto13g1796 498 PANTHER SERINE/THREONINE KINASE 8 497 - -
Sto13g1796 498 Pfam Kinase associated domain 1 455 497 IPR001772 -
Sto13g1796 498 ProSiteProfiles Protein kinase domain profile. 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g1796 498 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 449 497 IPR001772 -
Sto13g1796 498 Gene3D Transferase(Phosphotransferase) domain 1 10 347 - -
Sto13g1796 498 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 292 332 IPR015940 -
Sto13g1796 498 SUPERFAMILY UBA-like 281 330 IPR009060 GO:0005515
Sto13g1796 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Sto13g1796 498 Pfam Protein kinase domain 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g1796 498 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 497 - -
Sto13g1796 498 CDD STKc_AMPK_alpha 16 271 - -
Sto13g1796 498 CDD UBA_SnRK1_plant 293 333 - -
Sto13g1796 498 Gene3D Kinase associated domain 1, KA1 395 496 - -
Sto13g1796 498 SMART serkin_6 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g1796 498 SUPERFAMILY KA1-like 328 497 IPR028375 -
Sto13g1796 498 Pfam UBA/TS-N domain 293 329 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1796 Sto-Chr13 25401357 25406678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1796 19 271 CBL-interacting serine-threonine protein kinases AT4G24400 52.756 6.57e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Sto13g1796 Pkinase 1.1e-80 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1796 K07198 - gmx:100796687 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g1796 13 25401357 25406678 Sto13g1796 13 25401357 25406678 ECH