Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1795 ATGAAACAATACTTCAGATATTGTGAGTCAGCTGCTGATAAGTCATCTCGTTCAGTAGGAAGATGGGTGGCTGAGATTAAGGACACAATCCagaagattagggtttggtTGGGAACTTTTGACACTGCAGAGGAAGCTGCAAGAGCCTATGATGAAGCTGCTTGTCTCCTTCGTGGTGCCAACACCAGAACCAATTTCTGGCCTTCTCctcatccttcttcttcccctgcACTCCCCTCCAAGATCACCAATCTCCTCCTTCAAAGGCTCCAAGCAAGAAACAATAGCAGCAACTCTTGCTCTTCTGCTtctgttcttgttaatcacaagcagaatcaagaagaagaagcataTGGTGTGTGCAATGAGGAAGAATCTGCTGGTTTTTGTATTGACCAGTTCACTGATTTCCTTAATGATCCTCAAGAAGAGGATTACACCCCACTAGTTGATGATTCCTTGATCACTGCTAGTTTTGCATCATGTTTGAGTGCTGAAAATCATATTGCCATCACTCAAAAGGATGAGGAGGAAGAGAGTAGAAAGGGCGGCCCAGTGCACGAGCTTACTCCCCCCACCAGGTGGGATCTGGGGAGTGTCAGATGCACGCAGCCTTACCCCTGCGAGCAGAGAGGCTGTTtcgaggaagaggaggaggaagggaGTAGTGAAGAAGAAATAATCACTCATCATGATCATTTGGGTGTGGAAGATTTTGAGTTTCTGaacaatcataataataatgttgCTGCTCCATCTTGTTACTACTATTCTGCTTTTGAGATAGCTCAAGATCATCaaatggaggaggaggaggagagctTATATGCAGGGGATGAGCCTTCCATGCTCAGAGAAGCCATGAAGAGGATGAAGTATGAGAGGAAATTCTCAGCTTCCCTTTATGCATTCAATGGCATATCTGAGTGCTTGAAGCTGAAACTAGGATCTGGAAAGATCTCTGATCATCTTACCAATCTTAAGATGGCATGTAAGGAGAATAAGGAGGAAAAAGAACATTTGGGAGTAATGgacagaaaagaagaagaagaagaagaagaaagtacaGAAACATTGAAAGAGGTGGAatgttcttcatcttcatcttcatcttcaagtGTTGATGGTGAATTGTTACTTTGGAATTCACTGGATCTTCCTCCCATATGCTTTGTTAACTAA 1182 0.3587 MKQYFRYCESAADKSSRSVGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPSPHPSSSPALPSKITNLLLQRLQARNNSSNSCSSASVLVNHKQNQEEEAYGVCNEEESAGFCIDQFTDFLNDPQEEDYTPLVDDSLITASFASCLSAENHIAITQKDEEEESRKGGPVHELTPPTRWDLGSVRCTQPYPCEQRGCFEEEEEEGSSEEEIITHHDHLGVEDFEFLNNHNNNVAAPSCYYYSAFEIAQDHQMEEEEESLYAGDEPSMLREAMKRMKYERKFSASLYAFNGISECLKLKLGSGKISDHLTNLKMACKENKEEKEHLGVMDRKEEEEEEESTETLKEVECSSSSSSSSSVDGELLLWNSLDLPPICFVN 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1795 393 Pfam AP2 domain 20 59 IPR001471 GO:0003700|GO:0006355
Sto13g1795 393 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 17 330 - -
Sto13g1795 393 ProSiteProfiles AP2/ERF domain profile. 6 67 IPR001471 GO:0003700|GO:0006355
Sto13g1795 393 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 17 330 - -
Sto13g1795 393 MobiDBLite consensus disorder prediction 361 375 - -
Sto13g1795 393 SMART rav1_2 17 73 IPR001471 GO:0003700|GO:0006355
Sto13g1795 393 MobiDBLite consensus disorder prediction 338 375 - -
Sto13g1795 393 CDD AP2 17 66 IPR001471 GO:0003700|GO:0006355
Sto13g1795 393 Gene3D AP2/ERF domain 14 67 IPR036955 GO:0003700|GO:0006355
Sto13g1795 393 SUPERFAMILY DNA-binding domain 17 68 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1795 Sto-Chr13 25396700 25399215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1795 17 86 AP2-EREBP Transcription Factor Family AT5G19790 71.429 6.58e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto13g1795 AP2 4.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1795 K09286 - gmx:100796159 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g1795 13 25396700 25399215 Sto13g1795 13 25396700 25399215 ECH