Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1792 ATGGCAGCTTGTATACTCACAGTTTCGCAGAACGGAAGCGCCGACTATCGGACGGTGCAGGAAGCAATCGATGCTATCCCGCTCGGCAACAACCGCCGGACGGTGATTCGAGTGTCGCCGGGAATCTATAAGCAGCCGGTGTACATTCCGAAGACTAAGAATTACATCACCCTAGCTGGTCTGAGCCCGGAGGATACTGTGCTTACCTGGAACAATACTGCTACCAGAATTGAACACCACCAGGCTGCTCGGGTAATAGGGACTGGTACTTTTGGTTGTGGGAGTACCATTGTGGAAGGGGAGGATTTTATTGCTGAGAATATCACATTTGAGAATTCAGCCCCTCAGGGTTCAGGTCAAGCAGTGGCAATTAGAGTAACAGCAGATCGATGTGCCTTCTATAATTGCAGGTTCCTTGGATGGCAGGTATCTCCATGTTCCAATTTGCAGGTTTTATTGAAGACCATATTAAGGAGGTATGGAGGAGATAAAATTTCTTACATGACTATTGTGCAGGACACTCTGTACTTACATTATGGCAAACAGTACTTGAAAGATTGTTATATTGAAGGAAGTGTGGACTTCATTTTTGGTAATAGCACTGCCCTTTTGGAGCATTGCCATATCCACTGCAAGTCTCAAGGCTTCATAACTGCACAGAGCAGGAAATCTTCTCAGGAAACAACTGGTTATGTATTCCTAAGATGTGTCATCACGGGTAATGGAGGTACTTCATATGCATATCTTGGACGACCGTGGGGACCTTTTGGAAGAGTAATCTTTGCGTACACTTATATGGATCCATGTATAAGGCATGTTGGCTGGCATAACTGggataaaattgagaatgaaagaACTGCTTGCTTCTATGAGTACAGGTGTTTTGGACATGGTTGCTGTCCATCCAAACGAGTAACATGGGCTAGAGAATTGATGGATGAAGAAGCAGAGCAGTTCCTTGCACATCGTTTCATTGACCCAGATGCTAATAGACCTTGGCTTGCCCAAAGAATGGCCTTGAGGATTCCATACTCTGCTTAG 1041 0.4457 MAACILTVSQNGSADYRTVQEAIDAIPLGNNRRTVIRVSPGIYKQPVYIPKTKNYITLAGLSPEDTVLTWNNTATRIEHHQAARVIGTGTFGCGSTIVEGEDFIAENITFENSAPQGSGQAVAIRVTADRCAFYNCRFLGWQVSPCSNLQVLLKTILRRYGGDKISYMTIVQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTSYAYLGRPWGPFGRVIFAYTYMDPCIRHVGWHNWDKIENERTACFYEYRCFGHGCCPSKRVTWARELMDEEAEQFLAHRFIDPDANRPWLAQRMALRIPYSA 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1792 346 SUPERFAMILY Pectin lyase-like 2 333 IPR011050 -
Sto13g1792 346 Gene3D - 165 341 IPR012334 -
Sto13g1792 346 Gene3D - 3 155 IPR012334 -
Sto13g1792 346 Pfam Pectinesterase 7 142 IPR000070 GO:0030599|GO:0042545
Sto13g1792 346 Pfam Pectinesterase 168 326 IPR000070 GO:0030599|GO:0042545
Sto13g1792 346 ProSitePatterns Pectinesterase signature 2. 189 198 IPR033131 -
Sto13g1792 346 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 142 - -
Sto13g1792 346 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 171 345 - -
Sto13g1792 346 PANTHER PECTINESTERASE 171 345 - -
Sto13g1792 346 PANTHER PECTINESTERASE 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1792 Sto-Chr13 25371921 25375663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1792 5 339 Carbohydrate Esterase AT5G47500 36.522 1.38e-68 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1792 K01051 - gmx:100786786 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g1792 13 25371921 25375663 Sto13g1792 13 25371921 25375663 ECH