Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1782 ATGCATGGGGACGAAGACGAACAGGGGAGGGAGAGAGATGATTTGGGAACCAAATTAGGGTTCTCTGTGCATTGGATGACATTTGAATTGGGAGCAAAATTAGTATTGATGGTGCTTGTGGCTTTCTTAAACGCAGGTGGCTCAATTCTCGCTCCAGTGAAAATAATAGCATTTCTGGAAATTACTGAAACTGCAATCCACAGAGATCAATGCCAATGGCGTATGGAAAAGAAGCTACCAcagtgtttagtgtttgttaCACTTTCTGATCCAATGGGTCGATCTCCATGCTGCGACAAGGTTGGCTTAAAGAAAGGACCATGGACACCTGAGGAAGATCAGAAACTCTTAGCTTATATTGAAGAGCACGGCCATGGAAGGCTGGCGTGCCTTGCCTGCAAAAGCTGGTGGTCGGCTATAGCCACTCACTTGCCTAAAAGAACAGATAATGAGATCAAGAACTACTGGAACACGCATCTTAAGAAAAGGTTAGCCAAAATGGGGATTGACCCTGTGACCCACAAGCCCAAGAATGATGCACTTCTCTCCATTGATGGCCAATCCAAGAGTGCAGCAACCTTAGCCACATGGCTCAAGATACCACCACCCCCTATATCCTCCTCACCATCTCTAGATGTACTCAAGGCTTTGAACAATGGTAGTGGTGGTGATCACCTTGAGTCCCCTTCCTCTTCCCTAACTTTCTCTGAGAACGCACCACCAATAATGTCTAGTGCAATGCCTATGATTGAGTTTGTGGGCACTTCAGGCTCTTCTGAGACAGGTATTGTGAAAGAGGAAGGTGAGCAAGAGTGGAAAGGTTATGGTATAGACAACAACTCTGTGTCTTTTGCTTCTAGCCTGCATGAGTTGACAATGTCCATGGATGGCACGTGGACTTCTGAGTCTCTTAGGACTACCTGCACTGATCATCATGCCATTGCTGAGGAAGGGTTCACAAATCTTTTGCTTAATACCAACTCCGATGACCGGAGCTTGTCGGAGGAGGGCGGAGGAGAGTCGAATAATTGCGATGGTAGTGGTGGCGGTGGCGGCAACGGCAGTGGTAGTGGAAGTGGAAGCGGAAGTGGGAGTGACTTCTATGAAGATAACAAGAACTACTGGAACAGTATTCTTAATTTAGTAAACTCTTCCCCTTCTGATTCTCCCATGTTCTGA 1179 0.4597 MHGDEDEQGRERDDLGTKLGFSVHWMTFELGAKLVLMVLVAFLNAGGSILAPVKIIAFLEITETAIHRDQCQWRMEKKLPQCLVFVTLSDPMGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGRLACLACKSWWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPKNDALLSIDGQSKSAATLATWLKIPPPPISSSPSLDVLKALNNGSGGDHLESPSSSLTFSENAPPIMSSAMPMIEFVGTSGSSETGIVKEEGEQEWKGYGIDNNSVSFASSLHELTMSMDGTWTSESLRTTCTDHHAIAEEGFTNLLLNTNSDDRSLSEEGGGESNNCDGSGGGGGNGSGSGSGSGSGSDFYEDNKNYWNSILNLVNSSPSDSPMF 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1782 392 Gene3D - 102 166 - -
Sto13g1782 392 CDD SANT 107 160 IPR001005 -
Sto13g1782 392 Pfam Myb-like DNA-binding domain 105 160 IPR001005 -
Sto13g1782 392 Coils Coil 392 392 - -
Sto13g1782 392 MobiDBLite consensus disorder prediction 325 366 - -
Sto13g1782 392 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 92 134 - -
Sto13g1782 392 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 224 388 - -
Sto13g1782 392 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 137 194 - -
Sto13g1782 392 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 224 388 - -
Sto13g1782 392 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 137 194 - -
Sto13g1782 392 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 92 134 - -
Sto13g1782 392 SMART sant 104 162 IPR001005 -
Sto13g1782 392 ProSiteProfiles Myb-like domain profile. 100 160 IPR001005 -
Sto13g1782 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 164 IPR017930 -
Sto13g1782 392 SUPERFAMILY Homeodomain-like 92 169 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1782 Sto-Chr13 25232755 25239289 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1782 92 392 MYB Transcription Factor Family AT3G01140 38.693 1.70e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto13g1782 Myb_DNA-binding 4.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1782 K09422 - pop:7482487 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g1782 13 25232755 25239289 Sto13g1782 13 25232755 25239289 ECH