Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1776 ATGGGTCGATCTCCATGCTGCGACAAGGTTGGCTTAAAGAAAGGACCATGGACACCTGAGGAAGATCAGAAACTCTTAGCTTATATTGAAGAGCACGGCCATGGAAGCTGGCGTGCCTTGCCTGCAAAAGCTGgactTCAGAGGTGTGGCAAGAGCTGCAGATTGAGATGGACCAATTATCTTAGGCCTGATATTAAGAGAGGAAAGTTCAGTTTGCAAGAAGAGCAAACCATCATTCAACTCCATGCCCTCTTGGGGAACAGGTGGTCGGCTATAGCCACTCACTTGCCTAAAAGAACAGATAATGAGATCAAGAACTACTGGAACACGCATCTTAAGAAAAGGTTAGCCAAAATGGGGATTGACCCTGTGACCCACAAGCCCAAGAATGATGCACTTCTCTCCATTGATGGCCAATCCAAGAGTGCAGCCAACCTTAGCCACATGGCTCAGTGGGAAAGTGCTAGGCTTGAAGCTGAAGCAAGATTGGTTAGGGAATCAAAACTACGTTTCACACTCATTGCATCATCAGCATCAGCTTTGCACCTCTGGcttttcatcttcAACGCACCACCAATAATGTCTAGTGCAATGCCTATGATTGAGTTTGTGGGCACTTCAGGCTCTTCTGAGACAGGTAGTGTGAAAGAGGAAGGTGAGCAAGAGTGGAAAGGTTATGGTATAGACAACAACTCTGTGTCTTTTGCTTCTAGCCTGCATGAGTTGACAATGTCCATGGATGGCACGTGGACTTCTGAGTCTCTTAGGACTACCTGCACTGATCATCATGCCATTGCTGAGGAAGGGTTCACAAATCTTTTGCTTAATACCAACTCCGATGACCGGAGCTTGTCGGAGGAGGGCGGAGGAGAGTCGAATAATTGCGATAGCGGAAGTGGGAGTGACTTCTATGAAGATAACAAGAACTACTGGAACAGTATTCTTAATTTAGTAAACTCTTCCCCTTCTGATTCTCCCATGTTCTGA 987 0.4569 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPKNDALLSIDGQSKSAANLSHMAQWESARLEAEARLVRESKLRFTLIASSASALHLWLFIFNAPPIMSSAMPMIEFVGTSGSSETGSVKEEGEQEWKGYGIDNNSVSFASSLHELTMSMDGTWTSESLRTTCTDHHAIAEEGFTNLLLNTNSDDRSLSEEGGGESNNCDSGSGSDFYEDNKNYWNSILNLVNSSPSDSPMF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1776 328 CDD SANT 69 112 IPR001005 -
Sto13g1776 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Sto13g1776 328 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sto13g1776 328 MobiDBLite consensus disorder prediction 276 299 - -
Sto13g1776 328 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sto13g1776 328 CDD SANT 16 61 IPR001005 -
Sto13g1776 328 Gene3D - 69 116 - -
Sto13g1776 328 Gene3D - 13 66 - -
Sto13g1776 328 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 170 - -
Sto13g1776 328 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 192 324 - -
Sto13g1776 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Sto13g1776 328 SMART sant 66 114 IPR001005 -
Sto13g1776 328 SMART sant 13 63 IPR001005 -
Sto13g1776 328 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sto13g1776 328 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Sto13g1776 328 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sto13g1776 328 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 170 - -
Sto13g1776 328 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 192 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1776 Sto-Chr13 25193854 25195771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1776 1 328 MYB Transcription Factor Family AT3G01140 56.667 8.44e-123 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto13g1776 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1776 K09422 - tcc:18601559 487.648