Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1762 ATGGAGAGGACAAGCTTCAATATTGATGAAGAAAACACAAGAAGAACCCAGAAGCAACCTCCATGTCTTTACTTTGCAAAACTTGCACAGAATTATTACCCTCCTGGTTTCTTCCGAAAGGTATTGGCAGAGATTATAGGGACGTATCTGTTGGTGTTTGTGGGAAGTGGGTCGGCTGCTATGAGTGGCATTGATGAACACAAAGTGTCAAAATTAGGAGCCTCACTGGCTGGAGGGTTCATTGTGATCGTCATGATCTACGCCATTGGACACATCTCTGGTGCTCACATGAATCCAGCAGTCTCCATAGCTTTTGCCGCTACCACCCATTTCCCATGGAAACAGgTCCCATTTTACGTGGCAGCTCAATTGATAGGAGCCATTTCTGCTTCTTTCACACTGCGATTGTTGTTGGAACCAATAAGAGTGCTTGGTACAACCACACCTTCTGGAACAGACACTCAAGCTCTAATCATGGAGATCGTAGCAACGTTCACTATGATGTTTGTGGCCTCAGCCGTGGCCACTGATGCAAAAGCTATAGGAGAGTTAGCAGGAGTTGCAGTAGGATCCTCAGTGTGCATAGCAGGCATCCTTGCCGGACCCATATCAGGAGGATCAATGAACCCAGCAAGGACACTAGGTCCTGCAATTGCCAGTGCATCCTATAAGGGAATTTGGGTGTATCTGGTTGGACCAGTTACTGGGGCACTTTTAGGGGCATGGTCTTACAGTACTATTAAGGAGACAGACAAGTCTACCTCCACAAATTCCCTACCTTCATTTCCATTCAAGGTAGGTTTGGTGCATAGTGAAACTGAACAAGTTGTAAACAAAGACAGTCCACAAGTTGTGTGTGAAAACAATGTTTAA 873 0.4548 MERTSFNIDEENTRRTQKQPPCLYFAKLAQNYYPPGFFRKVLAEIIGTYLLVFVGSGSAAMSGIDEHKVSKLGASLAGGFIVIVMIYAIGHISGAHMNPAVSIAFAATTHFPWKQVPFYVAAQLIGAISASFTLRLLLEPIRVLGTTTPSGTDTQALIMEIVATFTMMFVASAVATDAKAIGELAGVAVGSSVCIAGILAGPISGGSMNPARTLGPAIASASYKGIWVYLVGPVTGALLGAWSYSTIKETDKSTSTNSLPSFPFKVGLVHSETEQVVNKDSPQVVCENNV 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1762 290 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Sto13g1762 290 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto13g1762 290 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto13g1762 290 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto13g1762 290 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto13g1762 290 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto13g1762 290 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto13g1762 290 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 25 262 - -
Sto13g1762 290 Gene3D Glycerol uptake facilitator protein. 4 259 IPR023271 -
Sto13g1762 290 CDD MIP 39 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto13g1762 290 Pfam Major intrinsic protein 37 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sto13g1762 290 SUPERFAMILY Aquaporin-like 33 252 IPR023271 -
Sto13g1762 290 PANTHER AQUAPORIN NIP2-1 25 262 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1762 Sto-Chr13 25075994 25079890 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1762 6 262 Major Intrinsic Protein MIP AT1G80760 42.085 4.26e-71 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1762 K09874 - cit:102612686 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g1762 13 25075994 25079890 Sto13g1762 13 25075994 25079890 ECH