Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1757 ATGATGCAACGGCCAAGGCTATTTCGGTCCCATCGCGtcaaaaaaaaggtaaaagtgCCCCCCTCCCACCCCCTAGTTCTACGGTACCGTTTCAGCCTTTCAGGACGTGTTTCTTTTGTCGGGGCTTATCGAGCAGATGTTAGAGCCATGGACTTAACCCCTACAATCCCCGCCACTAATACTACTCCTAGTAGTACCAAATCCCCAGACCATGACAGTGAAACGCCGACGCGGATCCAAACCGCCGCCAAGCCCTTGTCCATCTCCAACGGCGTCCTCAAGCGCCACCACCcactccaccaccaccaccatcaccaccaCAACAACAACAGCCTCTCCGGCCAGCCCGTCGCCGTCACCTACAAGGAATGCCTGAAGAACCACGCCGCCAGCATCGGAGGCCACGCGCTGGACGGTTGCGGCGAGTTCATGCCTTCCCCCAACGCCACCGCCGCCGACCCCAGCTCCATCAAGTGCGCCGCGTGCGGCTGCCACCGCAATTTCCACCGCCGCGAGCCGGAGGAGCCGCCGATCTCCACCACCCACGTCATCGAGTACCAACCCCACCATCGGCACCACCCTCCCCCGCCCCCGCCCTTCTCCAATCGAAGCCCCAATTCGGCCTCCCCGCCCCCGATCTCCTCGTCCTACTACCCCTCCGCGCCGCACATGCTCCTCGCCCTCTCCGGCGCGGGGCTCTCCGCCGCGCCGGAGAACGCCGCGGCGCCGGCGATCCCCTCCCTGAACGCGCGGAAGCGGTTCCGCACCAAGTTCACGCAGGATCAGAAGGAGAAGATGCTCCAATTCGCGGAGAAAGTGGGGTGGAAGATGCAGAAAAGGGACGACGATTTGGTGCAGGAATTCTGCAATGAGGTCGGGGTGGATCGAGGAGTCCTCAAGGTCTGGATGCACAACAATAAGAACACCTTCGGGAAGAGAGATGCGAGTAATGACGGCAGGAGCAACGAGCACGAGGGTAACGACGCCGCACAGGATCCcaaccaccatcatcatcatcatcatcatcgggACGACGACGTCGTTTACGGAAACGACGTCGTCCTCGTGGGTGGAGAAGGAGTGAACGACGTCGTCGTGGCTACTAACGGATCCTCCTCGTCCTCGTGA 1128 0.5762 MMQRPRLFRSHRVKKKVKVPPSHPLVLRYRFSLSGRVSFVGAYRADVRAMDLTPTIPATNTTPSSTKSPDHDSETPTRIQTAAKPLSISNGVLKRHHPLHHHHHHHHNNNSLSGQPVAVTYKECLKNHAASIGGHALDGCGEFMPSPNATAADPSSIKCAACGCHRNFHRREPEEPPISTTHVIEYQPHHRHHPPPPPPFSNRSPNSASPPPISSSYYPSAPHMLLALSGAGLSAAPENAAAPAIPSLNARKRFRTKFTQDQKEKMLQFAEKVGWKMQKRDDDLVQEFCNEVGVDRGVLKVWMHNNKNTFGKRDASNDGRSNEHEGNDAAQDPNHHHHHHHHRDDDVVYGNDVVLVGGEGVNDVVVATNGSSSSS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1757 375 Pfam ZF-HD protein dimerisation region 119 173 IPR006456 -
Sto13g1757 375 MobiDBLite consensus disorder prediction 308 344 - -
Sto13g1757 375 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 121 172 IPR006456 -
Sto13g1757 375 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 51 321 - -
Sto13g1757 375 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 51 321 - -
Sto13g1757 375 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 251 308 IPR006455 -
Sto13g1757 375 MobiDBLite consensus disorder prediction 187 215 - -
Sto13g1757 375 SUPERFAMILY Homeodomain-like 244 312 IPR009057 -
Sto13g1757 375 Gene3D - 242 311 - -
Sto13g1757 375 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 120 172 IPR006456 -
Sto13g1757 375 MobiDBLite consensus disorder prediction 311 334 - -
Sto13g1757 375 MobiDBLite consensus disorder prediction 54 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1757 Sto-Chr13 25011092 25014148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1757 55 307 ZF-HD Transcription Factor Family AT5G15210 53.333 2.87e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Sto13g1757 ZF-HD_dimer 1.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1757 - - jre:108985975 343.199