Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1752 ATGGGAAGGCCACCTTGTTGTGATCAAGAAGGCGTGAAGAAAGGACCATGGACACCTGAAGAAGACATCGTTTTGGTCTCTTATATTCAACAAAATGGCCCCGGAAATTGGAAATCTGTTCCTTCCAACACAGGGCTTTCACGATGCAGCAAAAGTTGTAGACTTAGATGGACAAACTACCTTAGGCCGGGGATTAAACGAGGCAACTTCACGGACCAAGAGGAGAAGACCATCATCCATCTTCAAGCTCTTTTGGGCAACAgATGGGCTGCAATTGCCTCGTACCTTCCGGAGAGAACGGACAACGATATAAAGAATTACTGGAATACCCATTTGAAGAAGAAGCTGAAGAAATTGGAGACTACTACGGAAGAAGAGTATTATGTTGGATCGAGGAGCGGCCCAATGGGCCGAGATAACATAGCTCGCTTGCTCAAAGGATGGATGAAAAATCCACCGAACAAATCTCAGTCTCAGGCCACAAATGTTGGTGATGTGAAGTTTGAGTCCTTGTTGTTTGGTTTGGATTTGGAATCTTCCAACTCTGAATTCTCACAATCTCTAGATGAAAGCAAGACTACTCCAGAATTGCCCTTCTCCTTGCTGGAGAAATGGCTTCTTGATGAGGTTGCTTCCCaagaataa 645 0.445 MGRPPCCDQEGVKKGPWTPEEDIVLVSYIQQNGPGNWKSVPSNTGLSRCSKSCRLRWTNYLRPGIKRGNFTDQEEKTIIHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKKLKKLETTTEEEYYVGSRSGPMGRDNIARLLKGWMKNPPNKSQSQATNVGDVKFESLLFGLDLESSNSEFSQSLDESKTTPELPFSLLEKWLLDEVASQE 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1752 214 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Sto13g1752 214 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sto13g1752 214 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sto13g1752 214 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 124 - -
Sto13g1752 214 CDD SANT 16 61 IPR001005 -
Sto13g1752 214 Gene3D - 68 130 - -
Sto13g1752 214 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sto13g1752 214 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 124 - -
Sto13g1752 214 CDD SANT 69 111 IPR001005 -
Sto13g1752 214 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sto13g1752 214 SMART sant 66 114 IPR001005 -
Sto13g1752 214 SMART sant 13 63 IPR001005 -
Sto13g1752 214 Gene3D - 13 66 - -
Sto13g1752 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Sto13g1752 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1752 Sto-Chr13 24927080 24928029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1752 1 126 MYB Transcription Factor Family AT5G62470 84.921 5.48e-81 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto13g1752 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1752 K09422 - jre:108984663 254.988