Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1748 ATGGTGCAGCGGCTCACCTACAGGAAGCGTCACAGCTACGCCACCAAATCCAACCAGCACAGGGTTGTCAAAACCCCTGgtgggAAGTTGGTGTATCAGACCACAAAGAAGAGAGCTAGTGGACCGAAATGCCCAGTTACTGGAAAGAGGATTCAAGGGGTATGTATGCCTTCTAAGTTTTATAGAATTTGTGGTGAACTTGCATGCAATTTGAGCTTCTCCGGTGGAATCATGTTTAGAAGTATAAGACCTGGTGTTGCAATTCCTCACCTGAGACCTGCTGAGTACAAGAGGTCTAGATTGCCCAGGAACCGTCGAACAGTTAATCGGGCCTATGGAGGTGTGTTATCTGGAGGAGCAGTTAGAGAAAGGATCATCCGTGCTTTCCTGGTTGAAGAGCAAAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGGCAAAAGAAAAGCAAGCATCAAAGAGTTAA 465 0.4559 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGVCMPSKFYRICGELACNLSFSGGIMFRSIRPGVAIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASKS 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1748 154 PANTHER 60S RIBOSOMAL PROTEIN L34 1 55 IPR008195 GO:0003735|GO:0005840|GO:0006412
Sto13g1748 154 PANTHER 60S RIBOSOMAL PROTEIN L34 87 154 IPR008195 GO:0003735|GO:0005840|GO:0006412
Sto13g1748 154 Pfam Ribosomal protein L34e 87 130 IPR008195 GO:0003735|GO:0005840|GO:0006412
Sto13g1748 154 Pfam Ribosomal protein L34e 1 55 IPR008195 GO:0003735|GO:0005840|GO:0006412
Sto13g1748 154 PANTHER - 87 154 - -
Sto13g1748 154 PANTHER - 1 55 - -
Sto13g1748 154 Gene3D - 84 154 - -
Sto13g1748 154 PRINTS Ribosomal protein L34 signature 13 26 IPR008195 GO:0003735|GO:0005840|GO:0006412
Sto13g1748 154 PRINTS Ribosomal protein L34 signature 26 43 IPR008195 GO:0003735|GO:0005840|GO:0006412
Sto13g1748 154 PRINTS Ribosomal protein L34 signature 44 54 IPR008195 GO:0003735|GO:0005840|GO:0006412
Sto13g1748 154 ProSitePatterns Ribosomal protein L34e signature. 15 28 IPR018065 -
Sto13g1748 154 Gene3D - 1 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1748 Sto-Chr13 24899097 24901024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1748 1 153 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 71.242 4.54e-68 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1748 K02915 - gmx:100305798 202.216