Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1737 ATGGCGTTCCCTCCTCCTCACACCTTCATGTTTCACCATGAAGATCATCATCAAGATCCTCCCTTCCCTCCATTATTACCTCCCCAACACTTCCAAACTCCTCCTCGTACCATCGGTACTGATCCATCTCAAGACAGATCTGATGGCTGTGCAGCAGTGAGTTTCGGCTCACTCCGAAGGGGCGGAGGAGGGTTCATGATGAAGAGGTCGATGTCGTTCAACAACTGCGAGGAATTGATGGCGATGAGCACGGGTTGCGGAGACGACGAGGTGTCGGACGACGGGAGCGTCCAGCTGGCGGGAGGCGGAGGCGGAGGaggggagaagaagaagaggctgAACGTGGAGCAGGTGAAGGCGCTGGAGAGGAGCTTCGAGGTGGGGAACAAGCTGGAGCCGGAGAGGAAGATGGAGCTGGCGAAGGCGCTGGGGTTGCAGCCGAGGCAGATCGCCATATGGTTCCAGAACAGGCGAGCCAGGTGGAAGACCAAGAGCCTCGAGAAGGACTACGATCTGCTCAAGAAACAGTTCGACTCACTCAAGCAGGATAACGATGCCCTCAAGATTCACAACCAGAAGCTACATGCACAGTTACAAGCTATGATGAAAGGAAGAGATCATCAAAGCTGTGAATTAGGAGCGGTGAGGGAAATGATGAAGAAAGAAAGGGAAGGTTCATGGAGCAATGGGAGTACTGATAATAGCTCAGACATGATCAATCTGGATCTATCGACAACAACACCAGAATGTTCTcaatctcatcatcatcatcatcatcagaataataataataatgggatCAATAAGCCCACCATTACTCAACTCCTTCACTTCTCATCAAGATCGGACATCCAAGATGATCACACCTTCTCCAACATGTTTaaccacaacaacaacaacaacaacattaatgatgatcatcatcatcgtcatgAGGAAGATGATCAGCAGCAAAATTTCTGGACCTGGCCAGATCAGCATCACAATTTTCATTGA 996 0.4498 MAFPPPHTFMFHHEDHHQDPPFPPLLPPQHFQTPPRTIGTDPSQDRSDGCAAVSFGSLRRGGGGFMMKRSMSFNNCEELMAMSTGCGDDEVSDDGSVQLAGGGGGGGEKKKRLNVEQVKALERSFEVGNKLEPERKMELAKALGLQPRQIAIWFQNRRARWKTKSLEKDYDLLKKQFDSLKQDNDALKIHNQKLHAQLQAMMKGRDHQSCELGAVREMMKKEREGSWSNGSTDNSSDMINLDLSTTTPECSQSHHHHHHQNNNNNGINKPTITQLLHFSSRSDIQDDHTFSNMFNHNNNNNNINDDHHHRHEEDDQQQNFWTWPDQHHNFH 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1737 331 MobiDBLite consensus disorder prediction 302 316 - -
Sto13g1737 331 ProSitePatterns 'Homeobox' domain signature. 139 162 IPR017970 GO:0000981|GO:0006355
Sto13g1737 331 MobiDBLite consensus disorder prediction 287 301 - -
Sto13g1737 331 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT7 1 331 - -
Sto13g1737 331 MobiDBLite consensus disorder prediction 287 316 - -
Sto13g1737 331 Pfam Homeobox associated leucine zipper 164 201 IPR003106 GO:0006355|GO:0043565
Sto13g1737 331 MobiDBLite consensus disorder prediction 228 250 - -
Sto13g1737 331 SMART HOX_1 107 168 IPR001356 GO:0003677
Sto13g1737 331 Coils Coil 163 190 - -
Sto13g1737 331 ProSiteProfiles 'Homeobox' domain profile. 104 164 IPR001356 GO:0003677
Sto13g1737 331 MobiDBLite consensus disorder prediction 221 270 - -
Sto13g1737 331 CDD homeodomain 109 165 IPR001356 GO:0003677
Sto13g1737 331 PRINTS Lambda-repressor HTH signature 135 144 IPR000047 GO:0003677
Sto13g1737 331 PRINTS Lambda-repressor HTH signature 144 160 IPR000047 GO:0003677
Sto13g1737 331 SUPERFAMILY Homeodomain-like 98 165 IPR009057 -
Sto13g1737 331 Pfam Homeodomain 109 162 IPR001356 GO:0003677
Sto13g1737 331 Gene3D - 104 169 - -
Sto13g1737 331 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 331 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1737 Sto-Chr13 24737137 24739075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1737 1 271 Homeobox Transcription Factor Family AT3G01220 44.966 1.44e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto13g1737 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1737 K09338 - gmx:100790803 271.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g1737 13 24737137 24739075 Sto13g1737 13 24737137 24739075 ECH