Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1721 ATGACGGACGGTCATCTCTTCAACAACATAACTCTGGGTGGCCGTGGAGGCACTACTCCAGGGCAGATGAAATTATATTCCGGAGGAATTATCTGGAAAAAACAAGGCGGTGGTAAAGCAATTGAGGTTGATAAAAAGGATATGATGGGAGTGACATGGATGAAGATTCCAAGGACTAATCAACTAGGTGTTCAGGTCAAAGATGGGTTGTACTACAAATTCACTGGATTTCGTGATCAGGATGTTCCAAATGTGACCACCTTTTTACAAAATACATGTGGGATAACACCAGAGGAGAAGCAGCTTTCTGTTAGCGGGCGTAATTGGGGAGATGTTGATCTAAATGGAAATATGCTGACCTTCATGGTTGGCCAAAAGCAAGCTTTTGAGGTGTCTTTAGCGGATGTCTCTCAAACACAGCTTCAAGGGAAAAATGATGTAATCTTGGAGTTTCATGTTGATGACACGACTGGAGCAAATGAGAAAGATTCGTTGATGGAGATAAGTTTTCATATACCAAATTCCAACACTCAGTTTGTTGGTGATGAAAATCGTCCTCCTGCTCAGGTTTTCCGTGACAAAATCATGTCTGTGGCGGATGTTGGTGCTGGAGGTGAAGATGCTGTCGTCACATTTGAGGGTATTGCTATCCTTACACCAAGGGGGCGATACAGTGTTGAGCTACATCTGTCATTCTTGCGGCTTCAGGGACAGGCTAACGATTTTAAAATCCAGTACAGCAGTGTAGTTCGGTTATTTTTACTTCCTAAGTCTAATCAGCCACATACCTTTGTCGTTATTAGTCTTGATCCACCTATTCGTAAAGGACAAACTTTGTACCCACACATTGTGATGCAGTTTGAAACTGATTATGTAGTTCAAAGCACCTTGTCAATGAGTGAAGATCTTTTGCACAGTAAGTACAAGGACAAGTTGGAGCTTTCATATAAGGGCCTTATCCATGAAGTTTTTACAACAATATTGCGAGGATTATCTAGTGCAAAAGTTACCAAACCAGGAAAATTCAGGAGCTGTCAAGATGGTTATGCAGTGAAATCGTCTTTGAAAGCTGAAGATGGAATTTTGTATCCCCTTGAGAAGAGCTTCTTTTTTCTACCAAAACCTCCTACCCTCATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGAGGCATGCTGCTGGTGGTTCAAATATGCATTATTTTGACCTTCTTATTAGACTAAAAACTGAGCAAGAGCATCTGTTCCGTAATATTCAGAGAAATGAATACCACAATCTGTTTGACTTTATCAGTTCAAAGGGCATGAAGATTATGAACCTAGGAGGTGTCCAGGCAGCTGATGGTGTTGCTGCAGTTCTTCGGGATGATGTTGATGATGCTGTTGATCCACATCTTGAGCGCATCAAGAATTTAGCTGGTGGAGATGAGAGTGATGAAGAGGATGAGGATTTTGTTGCTGATGTTGATGATGGTGGTTCTCCAACTGATGATTCTGGAGAAGATGACTCTGACGCAAGTGAAAGTGGCGAAGGGAAAGAGTGTCTGACATTAATGAACGCATATTCTCAGAAATCTGCCAAAAAGGAATCAAAGAAGGAAGTGTCTTCTAAGGCATCTACTTCTAAGAAGAAATCTAAAGATGGAGATGAagatggaaaaaagaaaaagcaaaagaagaaaaaggatcCAAATGCGCCAAAGAGGGCATTGTCTGGTTTCATGTTCTTCTCACAAATGGAAAGAGAGAATCTGAAGAAAACTAATCCTGGCATTTCATTTACGGATGTGGGAAGAGTACTCGGAGAGAAATGGAAAAAGATGTCAGCGGAGGAGAAGGAACCTTTTGAAGCAAAAGCTCGGGCGGATAAAAAACGTTACAAGGACGAGATCAGTGGTTACAAGAATCCGCAACCCATGAACGTTGACTCAGGAAATGAATCTGACAGTGCATAA 1956 0.4075 MTDGHLFNNITLGGRGGTTPGQMKLYSGGIIWKKQGGGKAIEVDKKDMMGVTWMKIPRTNQLGVQVKDGLYYKFTGFRDQDVPNVTTFLQNTCGITPEEKQLSVSGRNWGDVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENRPPAQVFRDKIMSVADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTLYPHIVMQFETDYVVQSTLSMSEDLLHSKYKDKLELSYKGLIHEVFTTILRGLSSAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISSKGMKIMNLGGVQAADGVAAVLRDDVDDAVDPHLERIKNLAGGDESDEEDEDFVADVDDGGSPTDDSGEDDSDASESGEGKECLTLMNAYSQKSAKKESKKEVSSKASTSKKKSKDGDEDGKKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKMSAEEKEPFEAKARADKKRYKDEISGYKNPQPMNVDSGNESDSA 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1721 651 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 1 649 - -
Sto13g1721 651 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Sto13g1721 651 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 649 - -
Sto13g1721 651 Gene3D - 96 179 IPR038167 -
Sto13g1721 651 MobiDBLite consensus disorder prediction 526 558 - -
Sto13g1721 651 Pfam HMG (high mobility group) box 567 635 IPR009071 -
Sto13g1721 651 SMART hmgende2 566 636 IPR009071 -
Sto13g1721 651 CDD PH2_SSRP1-like 342 441 - -
Sto13g1721 651 Gene3D - 1 92 IPR011993 -
Sto13g1721 651 CDD PH1_SSRP1-like 207 340 - -
Sto13g1721 651 MobiDBLite consensus disorder prediction 608 632 - -
Sto13g1721 651 SUPERFAMILY PH domain-like 206 440 - -
Sto13g1721 651 SMART Rtt106_2 348 441 IPR013719 -
Sto13g1721 651 MobiDBLite consensus disorder prediction 476 508 - -
Sto13g1721 651 MobiDBLite consensus disorder prediction 469 573 - -
Sto13g1721 651 Pfam POB3-like N-terminal PH domain 7 98 IPR035417 -
Sto13g1721 651 Gene3D - 199 338 - -
Sto13g1721 651 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Sto13g1721 651 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 567 635 IPR009071 -
Sto13g1721 651 CDD HMGB-UBF_HMG-box 567 632 - -
Sto13g1721 651 MobiDBLite consensus disorder prediction 637 651 - -
Sto13g1721 651 MobiDBLite consensus disorder prediction 608 651 - -
Sto13g1721 651 SUPERFAMILY HMG-box 554 636 IPR036910 -
Sto13g1721 651 Gene3D High mobility group box domain 550 645 IPR036910 -
Sto13g1721 651 Gene3D - 339 447 IPR011993 -
Sto13g1721 651 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Sto13g1721 651 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Sto13g1721 651 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Sto13g1721 651 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Sto13g1721 651 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Sto13g1721 651 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Sto13g1721 651 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Sto13g1721 651 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1721 563 635 ARID Transcription Factor Family AT1G04880 38.356 4.95e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Sto13g1721 POB3_N 9e-21 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1721 K09272 - qsu:112023366 1030.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g1721 13 24570224 24576640 Sto13g1721 13 24570224 24576640 ECH