Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1720 ATGGTTGTCTTAGCCATTACTATTCCATGCCTTGAGGCAAACATTGGAGATTTTGATGATTATCTACGAGAAAAAGCAAAGGAAGCTCGTAGAATAGCTCTTGAAGCCTATGAGGCAATAAATGAAGTCCATAACGAGGACCACGGCAATAACACAAGGAGGGACCTAGTGGAGGAATACAAGCTGGGGGAGAAATACACCGGACCATGCATGGCCACCAACCCGATCGATCGCTGCTGGAGATGCGACCCGAACTGGGCCAACGATCGCTTCAAGTTAGCCAAATGCGCGATGGGGTTCGGGCGCAAGGCCGTCGGAGGACTAGGCGGCAAGATCTACGTCGTAACGGATCCCACCGACGACGACGTGGCCGAGCCGAGACCCGGCACCTTAAGGTTCGGGGTGATCCAGAAGGGACCGCTATGGATCGTGTTCGAGCGATGCATGGTGATCATGTTGAAAGAAGAGCTATTGGTGTCTTCGGACAAGACCATTGATGGCCGAGGGGTCAATGTGCAAATTAAGGATGGTGCGGGGATCACTTTGCAATTTGTGAATAATGTCATAATCCATGGGCTTCGGATCCGTAATATAAGGTCTTGTAAAGGTGGTATGGTAAGGGACTCGGTGGACCATATTGGGCTTAGGACCAAGAGTGATGGAGATGCCATAAGCCTTTTTGGTGCCACCAATGTTTGGATTGATCACATTTCTTTGGCTGATGCTGAAGATGGGCTTATTGATGCCATCATGGGCTCTACTGCCATCACCATCTCAAATTGCCACATGACCAAACATGATGATGTGATGTTGTTCGGAGCCGGTGATGCCTATAGTGGAGACAAGGTGACGCAAGTAACGGTGGCGTTTAACCACTTTGGGAACGGATTGATACAGAGGATGCCACGTTGCAGATTCGGATGGTTCCACGTGGTGAACAACGATTACACACATTGGATCATGTACGCCATTGGAGGAAGCGCCAACCCCACCATACTGAGCCAAGGAAATCGCTTCATTGCTCCCAATAATGTGGCAGCCAAACAGGTCACAAACAGAGTGGGTGCTGAGGAATCCGTTTGGAAGAATTGGCAATGGCAAACACAGAATGACGAGTTTCTAAACGGTGCCATTTTCATTCCGTCGGGCCCACCGATAACGACCTTGGCTTTTGATAAAGGGAACTTGATTGAGCCCCGACCCGGTATTGAAGCGCCGACCCTATCGCGCTTTTCGGGTAGCCTTAATTGTAAGGTTCACGAATGTTTACTTGTGTTGGAAGCTCTAGTGGATCTTGTTGTGCCTTCTCATGCCTCTGATACCATGGACAAATCTAGATTCCAGAAAAGATCTGAATAA 1359 0.4908 MVVLAITIPCLEANIGDFDDYLREKAKEARRIALEAYEAINEVHNEDHGNNTRRDLVEEYKLGEKYTGPCMATNPIDRCWRCDPNWANDRFKLAKCAMGFGRKAVGGLGGKIYVVTDPTDDDVAEPRPGTLRFGVIQKGPLWIVFERCMVIMLKEELLVSSDKTIDGRGVNVQIKDGAGITLQFVNNVIIHGLRIRNIRSCKGGMVRDSVDHIGLRTKSDGDAISLFGATNVWIDHISLADAEDGLIDAIMGSTAITISNCHMTKHDDVMLFGAGDAYSGDKVTQVTVAFNHFGNGLIQRMPRCRFGWFHVVNNDYTHWIMYAIGGSANPTILSQGNRFIAPNNVAAKQVTNRVGAEESVWKNWQWQTQNDEFLNGAIFIPSGPPITTLAFDKGNLIEPRPGIEAPTLSRFSGSLNCKVHECLLVLEALVDLVVPSHASDTMDKSRFQKRSE 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1720 452 PANTHER PECTATE LYASE 18-RELATED 2 420 IPR045032 GO:0030570
Sto13g1720 452 Pfam Pectate lyase 155 339 IPR002022 -
Sto13g1720 452 PANTHER PECTATE LYASE 2 420 - -
Sto13g1720 452 Gene3D - 73 416 IPR012334 -
Sto13g1720 452 PRINTS Pollen allergen Amb family signature 96 113 IPR018082 -
Sto13g1720 452 PRINTS Pollen allergen Amb family signature 120 145 IPR018082 -
Sto13g1720 452 PRINTS Pollen allergen Amb family signature 156 172 IPR018082 -
Sto13g1720 452 PRINTS Pollen allergen Amb family signature 220 241 IPR018082 -
Sto13g1720 452 PRINTS Pollen allergen Amb family signature 300 319 IPR018082 -
Sto13g1720 452 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Sto13g1720 452 PRINTS Pollen allergen Amb family signature 364 388 IPR018082 -
Sto13g1720 452 PRINTS Pollen allergen Amb family signature 394 417 IPR018082 -
Sto13g1720 452 SUPERFAMILY Pectin lyase-like 74 392 IPR011050 -
Sto13g1720 452 SMART amb_all 148 345 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1720 Sto-Chr13 24543710 24549529 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1720 1 419 Polysaccharide Lyase AT3G01270 50.000 4.39e-163 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1720 K01728 - gmx:100785801 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g1720 13 24543710 24549529 Sto13g1720 13 24543710 24549529 ECH
Sto8g1959 8 12665878 12667319 Sto13g1720 13 24543710 24549529 ECH