Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1717 ATGGCGAGAAATGTAGCTATAGTTACCTTAATGTTCATGGTTGTCTTGGCCATTACTTTTCCATGCCTTGAGGCAAATATTGGAGAGTTTGATGACTATCTTCGAGAGAAAGCTAAGCAAGCTCGTAGAGCAGCTCTTGAAGCCTATGAGCCCAATCCTTTAAATGTCACATCCGAGCTCAATATGCATGTTCACTTGTCAACAGATAAGGTAAAAAACACCAAAGGGAGAGACCTGGGCGAGAAGAAATACAAAGGGCCGTGCCTCGCGACCAACCCGATCGACAGCTGCTGGAGATGCGACAAAGACTGGGTCGAGGATCGGTTCAAGTTGGCCGGCTGCGCGATGGGGTTCGGGCGGAAGACCACCGGGGGACTGGGCGGCCGAATCTACGTGGTGACGGACGATTCCGACGACGATGTGCTGGAACCGAAGAAGGGGACACTGAGGTGGGGGGTGATCCAAGAGGAGCCGTTGTGGATCACATTCAAGCATGACATGGTGATCAAGTTGAAAGAGGAGCTGATGGTGAATTCCAACAAGACCATTGATGGGCGTGGGGCCCACGTCCAAATAAAGGATGGTGGAGGGATCACTTTGCAATTTGTGAGCAATGTGATCATCCATGGGCTTCGTATTCGCAATATCAAGTCCAAGAAGGGTGGGATGATAAGGGACTCGGTGGACCATGTTGGGCTTAGGACCAGGAGCGATGGTGATGCCATTGGGCTCTTTGGGGCCACCAATGTTTGGATTGATCACATCTCCATGGCTAATTGTGATGATGGGCTTATTGACGTCATCATGGGCTCTACTGCTGTCACCATCTCCAATTGCCACATGACTAAACATAACGATGTACCCGGGGAAGCCTACAGTGGAGACAAGGTGATGCAAATAACAGTGGCATTCAACCATTTCGGCAAGGGTTTGATTCAGAGGATGCCTCGGTGCCGATTCGGGTGGGTCCACGTGGTGAACAATGACTACACCCACTGGATGATGTACGCCATCGGAGGAAGCTCGAACCCAATCATTCTTAGCCAAGGGAACCGATTCATCGCCACTAACAATCCCGCCACCAAACAGGTCACTTTCAGGATCAACACGCCCCAGGCCATCTGGAAGGACTGGCAATGGCAGTCGGAGGAGGACGAGTTCGTCAACGACGCCGTCTTCGTCCAATCGGGAAAACCTATTACTTCCTACTCTTTCGATAAGGACAACCTGATCCAACCCAAGCCGGGAGCTGACGCCCCGTTGCTCTCGCTCTTCTCGGGGAGGCTGAATTGCAAGGTAGGCAAGGCGTGTTAG 1314 0.5167 MARNVAIVTLMFMVVLAITFPCLEANIGEFDDYLREKAKQARRAALEAYEPNPLNVTSELNMHVHLSTDKVKNTKGRDLGEKKYKGPCLATNPIDSCWRCDKDWVEDRFKLAGCAMGFGRKTTGGLGGRIYVVTDDSDDDVLEPKKGTLRWGVIQEEPLWITFKHDMVIKLKEELMVNSNKTIDGRGAHVQIKDGGGITLQFVSNVIIHGLRIRNIKSKKGGMIRDSVDHVGLRTRSDGDAIGLFGATNVWIDHISMANCDDGLIDVIMGSTAVTISNCHMTKHNDVPGEAYSGDKVMQITVAFNHFGKGLIQRMPRCRFGWVHVVNNDYTHWMMYAIGGSSNPIILSQGNRFIATNNPATKQVTFRINTPQAIWKDWQWQSEEDEFVNDAVFVQSGKPITSYSFDKDNLIQPKPGADAPLLSLFSGRLNCKVGKAC 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1717 437 Gene3D - 91 430 IPR012334 -
Sto13g1717 437 PANTHER PECTATE LYASE 8 437 - -
Sto13g1717 437 Pfam Pectate lyase, N terminus 26 77 IPR007524 GO:0030570
Sto13g1717 437 Pfam Pectate lyase 172 353 IPR002022 -
Sto13g1717 437 SUPERFAMILY Pectin lyase-like 92 416 IPR011050 -
Sto13g1717 437 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Sto13g1717 437 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Sto13g1717 437 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Sto13g1717 437 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Sto13g1717 437 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Sto13g1717 437 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Sto13g1717 437 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Sto13g1717 437 PRINTS Pollen allergen Amb family signature 408 431 IPR018082 -
Sto13g1717 437 SMART amb_all 166 359 IPR002022 -
Sto13g1717 437 PANTHER PECTATE LYASE 18-RELATED 8 437 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1717 Sto-Chr13 24526531 24528744 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1717 8 437 Polysaccharide Lyase AT1G14420 54.464 3.05e-170 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1717 K01728 - gmx:100780236 575.859