Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1714 ATGGCAGAAAGAGCATTTAATAATGTCACCTTATTGTTAATAGCTACTTTCGCCATTGCCATCACTATTCCATGCGTTGAGGCTAACATTGGACAGTTTGATGACTATCTTCGAGAGAAAGCTGAGCAAGCTCGTAGAGCAGCTCTTGAAGCCTATGAGCACGACCCTTTCAATGTCACTTCCGAGTTCAATATGCATGTTCATCTGGCGATGGATGAGTTCAACAACGGAACAAGGAGAGCCTTATTAGCCCAGAAAGACAAGGGACCATGCATGATCACCAACCCGATCGACCGTTGTTGGAGATGCGACAAAAATTGGGCCAAGAATCGCTTCAAGTTAGCCTGGTGCGCGAAGGGTTTCGGGCGCAAAACCACCGGGGGACTGGGCGGTCCGATCTACGTAGTGACAGACAACTCCGACGACCTAGTCAACCCCAAACCCGGAACCCTAAGCATGGTGATCCAACTGAAAGGTGAATTGTTGGTGACTTCCAACAAGACCATTGATGGACGAGGGGCTAATGTGCAAATAAAAGGTGGTAGTGGCATCACTTTGCAATATGTGAATAATGTCATCATCCATGGGCTTCgcatcaagaatatcaagtctcAGAAAGGTGGGCTCATAAGGGACGCAGTGGACCACGTTGGGCTCAGAACGAGGAGTGATGGTGATGGCATTAGCCTCTTTGGTGCCACCAATGTTTGGATTGATCACATTTCCATGTCCAATGCTGATGATGGGCTAATTGATATCATCATGGCTTCTACCGGTATCACCATCTCCAACTGCCACTTGACCAAGCATAATGATgtGATGCTGTTCGGAGCAAACGACCTGCACGTTGGGGACAAGGTGATGCAAGTAACGGTGGCATTTAACTTCTTTGGGCAAGGGCTAACACAGAGGATGCCAAGGTGCAGATTCGGTTGGTTCCATGTGGTGAACAACCACTACACTCACTGGCAGATGCATGCCATTGGAGGAAGCTCCAACCCAACCATACTTAGCCAGGGAAATAGGTACATCGCACCTAACAATCCCCATGCCAAGATGATCACCTACAGACACGACACTCCAGAATCCGTGTGGAGGAAATGGCAATGGACGACGGAAATGGACGCGTTCGTGAACGGAGCGATATTTATCCCCTCGGGAAAGCCGGTGAGTAAGGCCGGAAtcaagaacttgatcaaaccaagaCCTGGGGTTGATGTCAGAAAGCTTACGCGTTATGCAGGTGCACTCAATTGTAAGGTGGGCCAGCCATGttag 1278 0.4734 MAERAFNNVTLLLIATFAIAITIPCVEANIGQFDDYLREKAEQARRAALEAYEHDPFNVTSEFNMHVHLAMDEFNNGTRRALLAQKDKGPCMITNPIDRCWRCDKNWAKNRFKLAWCAKGFGRKTTGGLGGPIYVVTDNSDDLVNPKPGTLSMVIQLKGELLVTSNKTIDGRGANVQIKGGSGITLQYVNNVIIHGLRIKNIKSQKGGLIRDAVDHVGLRTRSDGDGISLFGATNVWIDHISMSNADDGLIDIIMASTGITISNCHLTKHNDVMLFGANDLHVGDKVMQVTVAFNFFGQGLTQRMPRCRFGWFHVVNNHYTHWQMHAIGGSSNPTILSQGNRYIAPNNPHAKMITYRHDTPESVWRKWQWTTEMDAFVNGAIFIPSGKPVSKAGIKNLIKPRPGVDVRKLTRYAGALNCKVGQPC 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1714 425 Pfam Pectate lyase, N terminus 29 82 IPR007524 GO:0030570
Sto13g1714 425 SMART amb_all 152 349 IPR002022 -
Sto13g1714 425 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Sto13g1714 425 PRINTS Pollen allergen Amb family signature 140 165 IPR018082 -
Sto13g1714 425 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Sto13g1714 425 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Sto13g1714 425 PRINTS Pollen allergen Amb family signature 368 392 IPR018082 -
Sto13g1714 425 Pfam Pectate lyase 160 342 IPR002022 -
Sto13g1714 425 PANTHER PECTATE LYASE 9 425 - -
Sto13g1714 425 Gene3D - 94 418 IPR012334 -
Sto13g1714 425 SUPERFAMILY Pectin lyase-like 95 415 IPR011050 -
Sto13g1714 425 PANTHER PECTATE LYASE 18-RELATED 9 425 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1714 Sto-Chr13 24509514 24512361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1714 5 425 Polysaccharide Lyase AT1G14420 54.167 7.90e-169 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1714 K01728 - gmx:100780236 552.747