Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1678 ATGAAAATAGCTTGGCAATTGCTCACAAAAGAAAAAGCAATTTGGGTGAAGATTTTGAAGGAAAAGTATAAGTTTGACCCTTTGAGAGAAATTCCTAAGCATAAAACCTCCTGCTCCAATCTATGGGGAGGCCTTTGTAAAATTTGGAACTCCTTTTCTGATCATACTATGAAGGTCGTGAGAAATGGTGAAGACACCAAATTTTGGCTGGATTACTGGATTCCGAGAATTGCTTGTCTCTCCCCTCTTGTTGTTTCGACTATACCTCAAAACGAACTGCAGAAGAATACTATCAGTTACGTTATCGCTTCGGGGGAGTGGAACTGGGGCACTTTTGCCCACTTCCTCCCTAATTTTTGTGTTGCCTCTATTGAGAATATCAAGCCTCCCTCTAGAAATTATCCAAATGATTCTTTTGCTTGGGACCTCACCAACGATGGGTGCTTTACTGTCAAGGATTGGGATATTACCTTGCTTCATGTGTGCAGAGACAACAATGTTGTGGTTAACACTTTAGCTAAGTTAGGCCATAATTTACCTCTAGGAGCTAGAATTTTTAAGGTGCCTCCCACGGCTTGTATGTTAGCTTTAAGGGAAGATAGATCTAAGGCTGGTCTCGGCCTTAGTTCGAGACCATATTTTATAGCGAAGAGGTCAGCATATAAAATATCACTGAATCCAATGGAAACTGAGAATCCAACCATCATTGTACCATTTGAATCCCGTATAAGTCCTCCTACTCCAGATTTACCAGAATTGCCTCTCGAACTACCATCAACATTGATCTTGAATGTTCTTGGAGCTGGTGCTTTCCATTTAACTAACCCGTTGTACGCGTTCGCTATGGGATCACTGGTGTGGGTGTTCTTTGTGACGGATCACGAGGAGATTAAGGAGAAGACGAAGGTTTATGCGGCGAGTTTCGTGGAGTTGTCGGTGATGTCGCTGGTTATTAATGTGAGCCAGCATTATTGTTTCGCTTACATGGGAGAGTACTTGACCAAAAGGGTTAGGGAGAGAATGCTTTCGAAGATACTCACGTTTGAGGTTGGGTGGTTCGATGAGGACGAAAGTTCAAGTGGTGCGGTTTGCTCTAGACTCGCCAAAGATGCCAATGTGGTGAGATCTTTGGCTACAAACTTGCTCAACAGTAATAATAGCTTGCACAATGGCCCTAGTAATTGCATGGAGGCTCGCCATAGTTATGATAGCCGTTCAACCCATTATGCAGGAAGCATGACGTCAGACCTCGCCAAAGGAGCAGACTCCGTGGGCTCTGTTTTCGCAATTCTAGATCGGCACACCAAAATAGAGCCCAATGACCCAAATGGGTACAAGCCCGATAAGTCATTAACAGGCCTAATAGAACTCAATGACGTCTATTTCTTGTACCCAGCCCGACCTAGAGTACTGATCTTCCAGGGATTCTCAATGAGAATCGAAGCAGGGAAATCAACGGCATTAGTAGGCCATAGTGGGTCCGGAAAATCAACCATCATAGGATTAATACAAACATTCTACGACCCACAAAAAGGTACAGTGAATATCGACGGAAAGGACATAAAGTCGTACCAACTAAGGTCATATCGTGAACACATCGCATTGGTGAGTCAAGAACCGTCGCTATTTGCAGGGACCATAATAGACAACATAGCATATGGAGCGTCGCAAAAGGTTGATGAAGCAGAGATCATAGAGGCAGCTAGAGCGGCAAATGCCCATGAATTCATAACGAGGCTAAGGGATGGGTATGACACATGGTGTGGGGACAGAGGAGTACAACTATCAGGGGGCGAAAAGCAAAGAATAGCAATAGCGAGGGCTATAGTGAAAAATCCAAGGGTGTTACTGCTAGAAGAAGCATATAGAGGATGA 1875 0.4395 MKIAWQLLTKEKAIWVKILKEKYKFDPLREIPKHKTSCSNLWGGLCKIWNSFSDHTMKVVRNGEDTKFWLDYWIPRIACLSPLVVSTIPQNELQKNTISYVIASGEWNWGTFAHFLPNFCVASIENIKPPSRNYPNDSFAWDLTNDGCFTVKDWDITLLHVCRDNNVVVNTLAKLGHNLPLGARIFKVPPTACMLALREDRSKAGLGLSSRPYFIAKRSAYKISLNPMETENPTIIVPFESRISPPTPDLPELPLELPSTLILNVLGAGAFHLTNPLYAFAMGSLVWVFFVTDHEEIKEKTKVYAASFVELSVMSLVINVSQHYCFAYMGEYLTKRVRERMLSKILTFEVGWFDEDESSSGAVCSRLAKDANVVRSLATNLLNSNNSLHNGPSNCMEARHSYDSRSTHYAGSMTSDLAKGADSVGSVFAILDRHTKIEPNDPNGYKPDKSLTGLIELNDVYFLYPARPRVLIFQGFSMRIEAGKSTALVGHSGSGKSTIIGLIQTFYDPQKGTVNIDGKDIKSYQLRSYREHIALVSQEPSLFAGTIIDNIAYGASQKVDEAEIIEAARAANAHEFITRLRDGYDTWCGDRGVQLSGGEKQRIAIARAIVKNPRVLLLEEAYRG 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1678 624 SUPERFAMILY ABC transporter transmembrane region 260 382 IPR036640 GO:0005524|GO:0016021
Sto13g1678 624 ProSitePatterns ABC transporters family signature. 595 609 IPR017871 GO:0005524
Sto13g1678 624 Gene3D - 444 621 IPR027417 -
Sto13g1678 624 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 455 624 IPR003439 GO:0005524
Sto13g1678 624 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 311 383 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto13g1678 624 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 262 379 IPR039421 -
Sto13g1678 624 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 408 621 IPR039421 -
Sto13g1678 624 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 408 621 - -
Sto13g1678 624 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 262 379 - -
Sto13g1678 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 447 622 IPR027417 -
Sto13g1678 624 Gene3D ABC transporter type 1, transmembrane domain 250 385 IPR036640 GO:0005524|GO:0016021
Sto13g1678 624 Gene3D ABC transporter type 1, transmembrane domain 408 443 IPR036640 GO:0005524|GO:0016021
Sto13g1678 624 Pfam ABC transporter 474 621 IPR003439 GO:0005524
Sto13g1678 624 Pfam ABC transporter transmembrane region 270 381 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1678 Sto-Chr13 24067907 24079749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1678 412 621 Calmodulin-binding Proteins AT2G36910 53.810 6.29e-65 230