Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1672 ATGAAGAGAACAAGGGATGATGCTTATTCTACCTCTCAATTGAAACGACCCTTGGGTTCTTCGCGCGGTGATTCCTATGGCCAATCCCAAGTCCCTGGAGCTGCAGGAGGAGGGGGAGGAGCCGGAGGGGGAGGGGAAGGTACTTCACAGAAATTGACTACCAATGATGCCTTATCCTATTTGAAGGAAGTGAAAGACATGTTTCATGACCAAAGAGAAAAATATGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAAAGGACTGACACTGCGGGTGTCATAGCAAGGGTGAAGGAACTATTCAAAGGACACAATAACTTGATTTTTGGATTTAACACCTTCTTGCCAAAGGGATATGAGATAACTCTTGATGAGGATGAGGCTCCTCCAAAGAAAACAGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAATGATGAGCATGTTTACAAGTCATTCTTGGACATTTTGAATATGTACCGCAAAGAGCACAAGGATATTGGTGAGGTCTATAACGAGGTTGCTTCCCTTTTTGAGGATCATCCAGATTTGCTTGATGAGTTTACTAGATTCTTGCCAGACACTTCTGCAACAGCTTCTACACAGCATGTTCCATATGGCCGGAGTTCATTCCAGCGTTTCAATGAACGGAGTTCTACAGCACCCATGATGCGGCCAATGCAACAGCGCTATCGGCGGGATAGGATTATTAGTTCTCATGATCGTGATTTGAGTGTTGATCGTCCTGATCTGGATGATGATAAGGCAATGGTGAAAGTGCATAAAGAGCCAAAGAAGCGTGTTGATAAGGAAAGTAGGGATAGGAAAACTCGTGATCAGGATGATAGAGAAGCTGATCATGATAATAACAGGGATTCAAACTCGCGTTTTCCTGACAAGAAGAAATCTGTCAAGAAGGCTGAAGGTTTTGGGTTGACTGCTGACTTCGCTGCTTATGATGACAAAGATACCTTAAAGAGTATGTATAACCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGATAAGTTGGGCAGTTCAGATGACTATCAGGCATTCCTGAAGTGCCTTCACATTTTCAGCAATGGAATAATAAAAAGGAATGATTTACAAAATTTGGTAACTGATTTACTTGGAAAGTACCCTGATCTTATGGATGAATTCAATGAGTTCTTGGAGCGTTGTGAAAATATTGATGGTTTCCTTGCTGGTGTCATAAGTAAAAAGTCATTATGTAGTGATGGTCATTCATCAAGGACATCAAAATTGGAGGACAAAGATAAAGACCAGAATCAATTGAAAGATAAAGACAAGGAAAGACACCGAGAGAAATATTTTggaaaatcaattcaagaacTCGACCTCAGTAACTGTCAAATGTGTACACCAAGCTACCGGCTTCTTCCTGACGATTATCCAATTCCTACGGCCAGTCAGAGATCTGAGCTTGGTGCTCAGGTATTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAATATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGaTTTGAGCTGGATATGTTATTAGAATCTGTGAGTTCAGCAGCCAAATGTGCAGAGGAGTTGTATAATAGCATTAATGAAAATAAGATCAATATGGATGCTCCAATCTGTATTGAAGATCATTTTAGTGGCCTGAATTTAAGGTGCATTGAACGTCTATATGGAGACCATGGGCTTGATGTTATGGACATATTACGTAAAAATCCAACTCATGCTCTCCCAGTGATATTGACTCGTCTGAAGCAGAAACAGGATGAGTGGAGTAGGTGTCGTTCAGAGTTCAATAAGGTTTGGGCTGAAATTTATTCTAAAAACCACTACAAATCACTTGATCACCGTAGCTTCTATTTCAAGCAACAAGATTCGAAGAACCTGAGCACAAAATCTTTGATCGCtgaaatcaaagaaaataaagcTAAGAAGCAGAAAGAGTACGACATTCTTCAAGCTATTGCTGCTGGAAATAAACAGCCTCTAATTCCACATTTAGAGTTTGAATTTTCTGACATTGGGATTCATGAAGATCTATATAAACTTATTCGTTATTCATGTGAAGAGGTATTCTCAAGTAAAGAGCTGTCAAATAAAATCATGAGACTTTGGACTACCTTTTTGGAGCCAATGCTTGGTGTTCCCTCTCGTTCTCATGGGACAGAAAATGTGGAGGACAGGAAAACTGTGCATCGTGCTGCCAATTTTGTTGCATCAAATATAGGAGGTGATGGAAGTCCACACAGAGACTCTATCATAGTGAATTCTAGGTTGCTAAAATCTGATTATAAGGAAGTTGATGGTAGAGTAGCTGAGGCAAAGAATGTTCAACAGACTAGTTTAGCAGCCAATGATAAAGAAAATGGATCTGTTTCCGGTGATGGTGTTCATAGTGATGATCCTCTAGCGGATAAAGGGAAGAACAATGTAGATTGTAGTGAAAAAGTCTCTGGGTGTAGTAAACAAATTGTCTCTGATGAACAAGCGGCTATCAACAGTGCATCAGTTACAGCCAGAGGAGAGACTAGCCTAAGCAAAAATAGCTTAGAAATCACTGCAGGCTGTGTACTCAATACAGCAAGACCAACTGCTACGATAGGTGATGATGATTCCATAGCCAAGTCTCAGGGTGGTAATGTACCTTCGATGGAGGGACGAGACATTGCACCTCCACTTCCATCGGCCAATGGAGTTCTAATTGAAAGCAATAAAGTCAAAAGCCACGAAGAATCTGCAGGACCTAGCAAAGTTGAAAAGGAGGAGGGTGAATTATCGCCCAATGTTGATTCTGAGGAGGATAATTTCATTGGATATGGAGACTCCAGTGTGCAGGCAACGCCCAAGTCAAAACACAGTGTTGAAAGAAGGAATTATCAATCCAGAAATGGTGAGGAAGAATGCTGTCCAGAGGCTGGAGGTGATAATGGGGCAGATGCTGATGATGAGGACAGTGAAAATGCTTCTGAAGCTGGTGAAGATGTCTCAGGTAGTGAGTCTGCTGGTGATGCATGCTCTCGAGAAGAGCATGAGGAGGAGGAAGACATAGGACGTGATGTTGAAGGTAAGGTTGAGAGTGAAGGGGAAGCTGAGGGGATATGTGATGCACAATCTGCTGGAGGAGAGGGCTCATCATTGCCATTGTCAGAAAGGTTCCTTTTGTCTGTGAAGCCTCTTACAAAGCGTGTTTCAGCAGTTTCACATGTAGAGGAAAGAAACAATTTCCGGGTCTTCTATGGAAATGATGATTTTTTTGTGCTTTTTAGGCTCCATCAAATTCTTTATGAAAGGATTTTATCAGCAAAAAAGTATTCCATGAGTGCTGAAATGAAATGGAAAACTGCAAAGGAGGCTTGTTCTGCAGACCCTTATGCAAGATTTATGAATGCACTTTACAACTTGCTTGATGGATCTGCTGACAATGCAAAGTTTGAAGATGAATGCCGAGCCATTATTGGAAACCAGTCTTATGTATTGTTTACATTAGAcaagttaatatataaattggtcAGACAGCTTCAAACGGTCACAGCTGATGAGATAGACAACAAGCTTGTCCAATTGTATGAATATGAAAAGTCGCGGAAACCTGGGAAATTAATTGATTCAGTATATCATGCAAATGCACGTGTCATCCTTCATGACGAGAATATATATCGTTTGGAATGTTCATCTACCCCCTCCCGCCTATACATCCAGCTGATGGACAATATAAATGAAAAGCCTGAGGTGTTTGCAGTTTCTATGGAaccaaatttttctttttatctgtACAATGATTTTCTGTCAGTCTCTCCTGGTAAAAAGGAACCCCATGGAATTATACTGCAAAGAAACAAGCGCAGATACGGAAATTTAGATGAGCTTGCTGCAACGTGCTTGTCCATGGAAggtgttaaaataattaatggattGGAATGTAAGATAGCTTGCAGCTCGTCCAAGATCTCCTATGTTCTGGACACCGAAGATTTTTTCTTCCGCCctagaaaacaaagaaaaacatTACCGGTGACCgcatcttcttcttcgtcttcctcttcctcccagcATCGAAGGGCTAGAGAGGAAAGATTTCGCAGATTGTTATCAGTTTCATAA 4179 0.3958 MKRTRDDAYSTSQLKRPLGSSRGDSYGQSQVPGAAGGGGGAGGGGEGTSQKLTTNDALSYLKEVKDMFHDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGEVYNEVASLFEDHPDLLDEFTRFLPDTSATASTQHVPYGRSSFQRFNERSSTAPMMRPMQQRYRRDRIISSHDRDLSVDRPDLDDDKAMVKVHKEPKKRVDKESRDRKTRDQDDREADHDNNRDSNSRFPDKKKSVKKAEGFGLTADFAAYDDKDTLKSMYNQAFSFCEKVKDKLGSSDDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKYPDLMDEFNEFLERCENIDGFLAGVISKKSLCSDGHSSRTSKLEDKDKDQNQLKDKDKERHREKYFGKSIQELDLSNCQMCTPSYRLLPDDYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKCAEELYNSINENKINMDAPICIEDHFSGLNLRCIERLYGDHGLDVMDILRKNPTHALPVILTRLKQKQDEWSRCRSEFNKVWAEIYSKNHYKSLDHRSFYFKQQDSKNLSTKSLIAEIKENKAKKQKEYDILQAIAAGNKQPLIPHLEFEFSDIGIHEDLYKLIRYSCEEVFSSKELSNKIMRLWTTFLEPMLGVPSRSHGTENVEDRKTVHRAANFVASNIGGDGSPHRDSIIVNSRLLKSDYKEVDGRVAEAKNVQQTSLAANDKENGSVSGDGVHSDDPLADKGKNNVDCSEKVSGCSKQIVSDEQAAINSASVTARGETSLSKNSLEITAGCVLNTARPTATIGDDDSIAKSQGGNVPSMEGRDIAPPLPSANGVLIESNKVKSHEESAGPSKVEKEEGELSPNVDSEEDNFIGYGDSSVQATPKSKHSVERRNYQSRNGEEECCPEAGGDNGADADDEDSENASEAGEDVSGSESAGDACSREEHEEEEDIGRDVEGKVESEGEAEGICDAQSAGGEGSSLPLSERFLLSVKPLTKRVSAVSHVEERNNFRVFYGNDDFFVLFRLHQILYERILSAKKYSMSAEMKWKTAKEACSADPYARFMNALYNLLDGSADNAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVTADEIDNKLVQLYEYEKSRKPGKLIDSVYHANARVILHDENIYRLECSSTPSRLYIQLMDNINEKPEVFAVSMEPNFSFYLYNDFLSVSPGKKEPHGIILQRNKRRYGNLDELAATCLSMEGVKIINGLECKIACSSSKISYVLDTEDFFFRPRKQRKTLPVTASSSSSSSSSQHRRAREERFRRLLSVS 1392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1672 1392 MobiDBLite consensus disorder prediction 224 311 - -
Sto13g1672 1392 MobiDBLite consensus disorder prediction 894 1071 - -
Sto13g1672 1392 MobiDBLite consensus disorder prediction 930 951 - -
Sto13g1672 1392 SUPERFAMILY PAH2 domain 48 119 IPR036600 GO:0006355
Sto13g1672 1392 MobiDBLite consensus disorder prediction 1029 1056 - -
Sto13g1672 1392 Pfam Sin3 family co-repressor 468 559 IPR013194 -
Sto13g1672 1392 SUPERFAMILY PAH2 domain 337 403 IPR036600 GO:0006355
Sto13g1672 1392 Pfam C-terminal domain of Sin3a protein 1104 1352 IPR031693 -
Sto13g1672 1392 MobiDBLite consensus disorder prediction 237 311 - -
Sto13g1672 1392 MobiDBLite consensus disorder prediction 420 446 - -
Sto13g1672 1392 ProSiteProfiles PAH domain profile. 334 403 IPR003822 GO:0006355
Sto13g1672 1392 SUPERFAMILY PAH2 domain 131 203 IPR036600 GO:0006355
Sto13g1672 1392 Gene3D Paired amphipathic helix 56 118 IPR036600 GO:0006355
Sto13g1672 1392 MobiDBLite consensus disorder prediction 426 446 - -
Sto13g1672 1392 MobiDBLite consensus disorder prediction 11 28 - -
Sto13g1672 1392 PANTHER SIN3B-RELATED 1 1369 IPR039774 GO:0003714
Sto13g1672 1392 Coils Coil 661 681 - -
Sto13g1672 1392 MobiDBLite consensus disorder prediction 1002 1016 - -
Sto13g1672 1392 Gene3D Paired amphipathic helix 133 205 IPR036600 GO:0006355
Sto13g1672 1392 ProSiteProfiles PAH domain profile. 50 120 IPR003822 GO:0006355
Sto13g1672 1392 MobiDBLite consensus disorder prediction 1 50 - -
Sto13g1672 1392 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1369 - -
Sto13g1672 1392 Gene3D Paired amphipathic helix 332 405 IPR036600 GO:0006355
Sto13g1672 1392 Pfam Paired amphipathic helix repeat 356 400 IPR003822 GO:0006355
Sto13g1672 1392 Pfam Paired amphipathic helix repeat 157 201 IPR003822 GO:0006355
Sto13g1672 1392 Pfam Paired amphipathic helix repeat 73 117 IPR003822 GO:0006355
Sto13g1672 1392 ProSiteProfiles PAH domain profile. 134 204 IPR003822 GO:0006355
Sto13g1672 1392 MobiDBLite consensus disorder prediction 976 990 - -
Sto13g1672 1392 MobiDBLite consensus disorder prediction 1362 1383 - -
Sto13g1672 1392 MobiDBLite consensus disorder prediction 802 836 - -
Sto13g1672 1392 SMART hdac_interact2seq4b 465 565 IPR013194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1672 Sto-Chr13 23988489 24003614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1672 32 153 WRKY Transcription Factor Family AT4G12020 48.780 4.14e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sto13g1672 Sin3a_C 4e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1672 K11644 - gmx:100807181 2086.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g1672 13 23988489 24003614 Sto13g1672 13 23988489 24003614 ECH