Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1665 ATGGGGGAAGCAGAGACGAGTTCGGATCGGGAAATCGCGACATCTGTCACGACCGGATCGGTCATAAGTCAAAGTACTCATGAAGATTCTTGGGATCGGATGTTAATGCTTGTGGGGGCAATAGCTGCTATTGCTAATGGCATGTCTTTGCCTTTGATGACCATAATTTTTGGAGATGTCTTTGATGCTTTTGGAGCACATAGTGACACCAAAAAACTTgtGTCTCTTGACTTTGTATACCTGGCTTTGGGCACCTTTTTCGCTTCATTTTTGCaggtGAGTTGTTGGATGGTGACTGCGGAGAGACAAAGTGCAAGAATAAGAAGATTATACTTGCAAGCTGTTTTGAGACAAGATATCGGCTTCTTTGATAAGGAAATCACCAGTGGTCAAGTTGTTGCAAGCATGTCAGGCGATGCACTTCTTATTCAAGAGGCCACGGGCGACAAGGTAGGAAAGTTGATACAACATGTGTCAACATTTATGGGAGGTTTGATGATAGCATTTTGGAAGGGTTGGTTTCTAACCCTTGTGCTGCTAtcttttcttcctcctcttgtTTTCTCCGGTGCCCTAATGAGCTTCGTCGTCGTAAAGATGGCTTCACGTGGACAAGCAGCTTATTCTGAAGCAGCAACTCTAGTAGACCAGACAATCACTTCTATTCGAACTGTTGCATCATTCACAGGGGAGAAGCAAGCTATAGCTGAGTACAATAAGTCCTTAATGAAAGCTTACCGTAGTGGTGTGCAAGAGGGAGTGGCTTCTGGTTTGGGTTATGGTTCAGTTCGTTTGATTGTGTATAGCACTTATGGTTTTGCTGTATGGTATGGAGGCAAAATGGTAATAGAGAAAGGATATACTGGAGGCCAAGTCATGAATGTTTTCATAGCCATATGCAATTGCTCCTTggcTCTAGGGCAGGCATCTCCAAGCTTGAGTGCATTTGCAGCAGGACAAGCAGCAGCCATTAAAATGTTTGAAACAATAAAGAGAAAGCCAGAGATTGATGCTTGTGAAACTTCTGGTCTTCAGCTAGAAGATATCCATGGAGATATAGAACTAAAGGAGGTTTGCTTTAGTTATCCTTCAAGGCCAAATGAACTCATATTCAATGGATTCTCTCTTTCAATACCTAGTGGTACTAATGTGGCTTTAGTAGGCCAAAGTGGGAGTGggaaatccacaattcttaGTTTGATTGAGAGATTCTATGATCCCCAAGATGGTGAAATCCTCATTGATGGTATCAATCTTAAGGAGTTTCAACTGAAATGGATCAGACAAAAGATAGGACTTGTGGGTCAAGAACCAGTTCTGTTTTGTTGTAGCATTAAAGAGAATATTGGTTATGGTAGGGATGGTGCAACTGATGAGGAAATTAGATGTGCAGCAGAGATTGCTGATGTTGCCAAGTTCACTGATAAACTTCCTCAGGGACTAGACACAATGGTAGGTGAGCATGGGACTCAGCTTTCTGGGGGTCAAAAGCAAAGAGTTGCTATTGCAAGAGCAATCTTGAAAGACCCAAGAATTCTTCTTCTTGATGAAGCCACAAGTGCCCTTGATGTTGAATCTGAAAGAACAGTGCAGGAGGCACTAGAGAGAATCATGATAAGCAGGACTACTATTATTGTAGCCCATCGCTTAACTACTATAAGGAATGCTGATACTATTGCTGTTATTCATGAGGGAAAGATAGTAGAAAAAGGTTCACATGCTGAGCTCATCAGGGACCCTAATGGAACATATAGCCAGCTCATTAGATTTCAACAAGAAACTAAAAGAGAACCAGAACAAAATGATGCAGATGAGAAAGATAAGCCAGAAAGTTATACAAGTCAACAACTTTCTTTCATTCGATCTTTAAGTCAAGAATCATTTGtaaCTACATCTGGTCACTTAGAAGCGACGGGTGAGGACTCCGAAGCCCTTCCTTCTCCCACAACATCACACAATAATACTACCAAACAAGTCTCACTTTTCCGCCTTGCTCATCTAAACAAGCCAGAATTCCCAATattagccatggggattttggCTGCTGCAATAAATGGAGCATTTTTACCCACCATGGGACTCCTAACGTCCAGCATGATAAACACATTCTATGAAACTCCAGAAAAGCTTCAAAAGGACTCCAAATTTTGGGCCTACATATTTGTCTCACTGGCTGTGGCTGCATTCTTGGTTTCTCCAATAAGATCCTACTTTTTTGCCATAGCTGGGTGTAAGCTGATAAAGAGGATAAGACTATTGTGTTTTGAGAAGGTGGTTCATATGGAAATGAGTTGGTTTGATGAGGTTGAACATTCATGTGGAGCAATTGGAGCAAGGCTTGCCATTGATGCTGCTTCTGTTAGAGCTTTGGTTGGGGATGCATTGGGTTTGTTGATTCAAGATGTTTCTACTGCAATCATTGCTTTGGTGATTAGCTTTGAGgcaaattggcagctctctttgGTGATTCTTGTTTTGCTGCCTTTGTTGGTGGTAAATGGGCAAGTGCAAGTGAAGTCCATGCAAGGATTTGGATCAAATGCAAAGAAACAATATGAGGAAGCAAGTCAAATTGCAAATGATGCGGTAAAAAGTATAAGAACAATTGCTACATTTTGTGCTGAAGAGAAGGTGATGGAACTATACCAGAAGAAATGTGAAGGAGTGATAAAGACATGTGTAAGGCAAGGGTTAATCCATGGAGTTGGATTAGGGTTATCATTCCTCTTTCTGTATTTTGTCTATGCATGCAGTTTCTATGCTGGGGCCCAATTAGTTCAACATGGAAAAGCATCAACCTCAGATGTTTTCCGTTGTCTGATTTTCCACTGTTGGAGGGAAGACAGGAGGTACCTGCAATTGTTAACCACAGGAAAGAAAGGACTGGTGTTAGGGAGCCAATTGGATTCCAATCTGCAAAGCCCACAACTCAGCTATGAAGATATTACCGGATCCAGTGAAATGGCTAAAGCTAATAACATGCCATATTCCTCTAACCGTATAGAAGCTAGAGGGGACTTTAAGGGAGGACCAGACATTGGAGCTGACCTGGCAGTCTCTAAGAATATGTATCGGGTGTTCTTCGTCGAGGAGACAGATATTGCAGAGCGGACTTTGAAGACAACTAAGTCTATGAAGTTTTGA 3144 0.4068 MGEAETSSDREIATSVTTGSVISQSTHEDSWDRMLMLVGAIAAIANGMSLPLMTIIFGDVFDAFGAHSDTKKLVSLDFVYLALGTFFASFLQVSCWMVTAERQSARIRRLYLQAVLRQDIGFFDKEITSGQVVASMSGDALLIQEATGDKVGKLIQHVSTFMGGLMIAFWKGWFLTLVLLSFLPPLVFSGALMSFVVVKMASRGQAAYSEAATLVDQTITSIRTVASFTGEKQAIAEYNKSLMKAYRSGVQEGVASGLGYGSVRLIVYSTYGFAVWYGGKMVIEKGYTGGQVMNVFIAICNCSLALGQASPSLSAFAAGQAAAIKMFETIKRKPEIDACETSGLQLEDIHGDIELKEVCFSYPSRPNELIFNGFSLSIPSGTNVALVGQSGSGKSTILSLIERFYDPQDGEILIDGINLKEFQLKWIRQKIGLVGQEPVLFCCSIKENIGYGRDGATDEEIRCAAEIADVAKFTDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDVESERTVQEALERIMISRTTIIVAHRLTTIRNADTIAVIHEGKIVEKGSHAELIRDPNGTYSQLIRFQQETKREPEQNDADEKDKPESYTSQQLSFIRSLSQESFVTTSGHLEATGEDSEALPSPTTSHNNTTKQVSLFRLAHLNKPEFPILAMGILAAAINGAFLPTMGLLTSSMINTFYETPEKLQKDSKFWAYIFVSLAVAAFLVSPIRSYFFAIAGCKLIKRIRLLCFEKVVHMEMSWFDEVEHSCGAIGARLAIDAASVRALVGDALGLLIQDVSTAIIALVISFEANWQLSLVILVLLPLLVVNGQVQVKSMQGFGSNAKKQYEEASQIANDAVKSIRTIATFCAEEKVMELYQKKCEGVIKTCVRQGLIHGVGLGLSFLFLYFVYACSFYAGAQLVQHGKASTSDVFRCLIFHCWREDRRYLQLLTTGKKGLVLGSQLDSNLQSPQLSYEDITGSSEMAKANNMPYSSNRIEARGDFKGGPDIGADLAVSKNMYRVFFVEETDIAERTLKTTKSMKF 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1665 1047 SUPERFAMILY ABC transporter transmembrane region 32 335 IPR036640 GO:0005524|GO:0016021
Sto13g1665 1047 CDD ABC_6TM_Pgp_ABCB1_D2_like 667 941 - -
Sto13g1665 1047 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 353 589 IPR003439 GO:0005524
Sto13g1665 1047 MobiDBLite consensus disorder prediction 592 611 - -
Sto13g1665 1047 CDD ABC_MTABC3_MDL1_MDL2 353 591 - -
Sto13g1665 1047 CDD ABC_6TM_Pgp_ABCB1_D1_like 36 314 - -
Sto13g1665 1047 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 29 940 - -
Sto13g1665 1047 SMART AAA_5 380 568 IPR003593 -
Sto13g1665 1047 MobiDBLite consensus disorder prediction 592 615 - -
Sto13g1665 1047 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 37 318 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto13g1665 1047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 344 591 IPR027417 -
Sto13g1665 1047 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 676 941 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto13g1665 1047 PANTHER - 29 940 - -
Sto13g1665 1047 Pfam ABC transporter transmembrane region 37 302 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto13g1665 1047 Pfam ABC transporter transmembrane region 676 940 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto13g1665 1047 SUPERFAMILY ABC transporter transmembrane region 663 941 IPR036640 GO:0005524|GO:0016021
Sto13g1665 1047 Gene3D - 351 604 IPR027417 -
Sto13g1665 1047 Gene3D ABC transporter type 1, transmembrane domain 77 941 IPR036640 GO:0005524|GO:0016021
Sto13g1665 1047 Pfam ABC transporter 372 520 IPR003439 GO:0005524
Sto13g1665 1047 ProSitePatterns ABC transporters family signature. 492 506 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1665 Sto-Chr13 23854246 23868101 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1665 29 941 Calmodulin-binding Proteins AT2G36910 38.453 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1665 K05658 - gmx:100777713 1219.91