Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1627 ATGGAAAATTGTCACTGTGTTATGCCTTCTCATTGCGACATTTCCACAAACATCTTAAGCTCATTCTTAGTTGATGTGTTTCCGATTAAATCTGAGATGTCAAAACATATGTATCATAAGTGGTTTTTTGACCATACCCATTTGAAGATGGCTTGGATTCATCATCAAATCCAGCCAAAAGATGGTTACCTAAGCTACCCTCCACCTGTTTTCCCTTCATATCCGTCTCCATACCCAGATTCTTTCCACAACGAATCAATGTCGTCTTCGTCGTTATCACCACCACCGGCATCATCTAGAATTAGTCCGGCTGTTCTTTTCATCATAGTGATTCTAGCTGTGCTGTTTTTCATATCTGGTCTGCTTCACCTGCTTGTTAGATTTCTCATAAGACCATCTACTCATTCCAATAGACACCATCAGGACATTTCTACCTCAGATGCTCTGCAGAGACAGCTGCAACAACTCTTCCATCTCCATGATTCTGGTCTAGATCAAGCTTTCATTGATGCATTACCTGTTTTCCAGTATAAAGAAATTGTGGGTCTGAAGGAACCATTTGATTGTGCTGTTTGTTTGTGTGAGTTTACTGAAAAAGATAAGCTCAGGTTGCTTCCTACCTGCAGCCATGCTTTTCATATCAGTTGCATTGACACATGGCTTCTATCGAACTCGACGTGCCCGCTTTGTAGAGGAACCCTCTTTGCTCCGGGATTTTCATTTGAAAACCCTATGTTTGATGTTGATGATGTAAGGGAAAATGGTTGCCCCTATAATGAAGAAAATGGATTCAGTATTACTAGACAGAAAACAGTTGAAATTGAAGAAGATATAGAGAAAGGGATTCTTCCTGTAAGACTTGGAAAATTCAGAAAGCTCAATGTGGAAGAGGAAGGGGAGAATGCAGGAGGAGAGACTAGTAGCCGTAATTTGGATGCAAGAAGATGTTTCTCAATGGGGTCTTACCAGTATGTGTTAGGTAATTCAGACCTAAGAATTACCTTGAACCATGACAGTACAAATCTCACTGAAGGAACAGAACACAATGATAATATCACACTTGAGGGGGATAAGGAAGGCAAAAGGATTACTAGTGTGAGTAAAGGTGAGAGCTATTCTGTGTCCAAAATCTGGCTGTGGTCGAACAAGGGTAAATTTTCGAGTTCTTCGGACGCTCAAATGGACATGCCGTCATCTCTTGATACGGACTTGCCTTGGATGCGGAAGACAAGAGAAGGAACCTGA 1245 0.412 MENCHCVMPSHCDISTNILSSFLVDVFPIKSEMSKHMYHKWFFDHTHLKMAWIHHQIQPKDGYLSYPPPVFPSYPSPYPDSFHNESMSSSSLSPPPASSRISPAVLFIIVILAVLFFISGLLHLLVRFLIRPSTHSNRHHQDISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFTEKDKLRLLPTCSHAFHISCIDTWLLSNSTCPLCRGTLFAPGFSFENPMFDVDDVRENGCPYNEENGFSITRQKTVEIEEDIEKGILPVRLGKFRKLNVEEEGENAGGETSSRNLDARRCFSMGSYQYVLGNSDLRITLNHDSTNLTEGTEHNDNITLEGDKEGKRITSVSKGESYSVSKIWLWSNKGKFSSSSDAQMDMPSSLDTDLPWMRKTREGT 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1627 414 Pfam Ring finger domain 188 231 IPR001841 -
Sto13g1627 414 ProSiteProfiles Zinc finger RING-type profile. 189 231 IPR001841 -
Sto13g1627 414 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 50 396 - -
Sto13g1627 414 CDD RING-H2_PA-TM-RING 188 231 - -
Sto13g1627 414 PANTHER RING-H2 FINGER PROTEIN ATL46-LIKE 50 396 - -
Sto13g1627 414 SUPERFAMILY RING/U-box 168 237 - -
Sto13g1627 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 236 IPR013083 -
Sto13g1627 414 SMART ring_2 189 230 IPR001841 -
Sto13g1627 414 MobiDBLite consensus disorder prediction 387 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1627 Sto-Chr13 23451550 23452917 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1627 98 390 C3H Transcription Factor Family AT2G18650 46.809 9.37e-64 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1627 - - qsu:112013252 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g1627 13 23451550 23452917 Sto13g1627 13 23451550 23452917 ECH