Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1511 ATGTGGCAACTTCGGGGGAATCCCACTTTTGCAGATCCATATAGCTCTCAAAAGCTGGTTGCTAGTGATGAAACTAATGTTGATGCTGTTAAGGGCTATGGAGCAAAGCACAACAACATGATTGATTTTGCAGAGAAAAACAATGAACTCTTAACCTCTTTGTATGTGTCTAGAACAGATTTCACAAGAATTGAAATGGGAGAAGAAAATATTTGCATGAAAACAACTTCTTGTCAATTAATGGTTCATGAAAACTATCTGGGTGCTCCTCCTCAACTTGATGCAGAGGTTAATGACTATGGATCAGAGCACAACAACTTGATTGATTTTAGAGACAAACACCATGAATTCTTGAGGTCTTTGTATGTGTCTAGAACATATTTCACAACAAGTACTGAAATGGGAGAAgaaaatatttgcatgaagtatAAGAAAGATGGTACTTTATTGGTTTGTAAAACAACTACTTGTCCATTAATGGTTCATGAAAACTATCTCGGTGCTCCTGCACAACTTGATGCAGAggTTAATGGCTATGGAGTAGAGCACAACAACATGATTGATTTTGAAGACAAAAACCATGAATTCTTGAGCACTTTAACAACTATTTGTCAATTAATGGTTCATGAAAACTACTTGGGTGCTCCTGCTGAACTTGATGCAGAggTTAATGGCTATGGAGCAGAGCACAATAACATGATTGATTTTGCAGACAAATACCATGATTTCTTGAGCTCTTTGTATGTGTCTAGAACAGATTTCACAACAAGTGGAAAGAAAGGCTCCGGCGGCGTGCGGTGTTGCCAGGCGGAGAAGTGCACGGCGGAGCTGAGTGATGCGAAGCCGTATCGTCGAAGGCACAAGGTGTGCGAAAACCACGCCAAGGCTCAGGTAGTGATGGTGTGTGGCATACGACAGCATTTTTGTCAGCAATGCAGCAGATTTCACGAGTTGGGGGATTTTGATGAGACGAAGAGGAGTTGCAGGAGGCGTTTGGCTGGCACAACGAGAGGAGAAGGAAGAGCGCGACGTCATCACAAGCAGAATTAG 1050 0.4095 MWQLRGNPTFADPYSSQKLVASDETNVDAVKGYGAKHNNMIDFAEKNNELLTSLYVSRTDFTRIEMGEENICMKTTSCQLMVHENYLGAPPQLDAEVNDYGSEHNNLIDFRDKHHEFLRSLYVSRTYFTTSTEMGEENICMKYKKDGTLLVCKTTTCPLMVHENYLGAPAQLDAEVNGYGVEHNNMIDFEDKNHEFLSTLTTICQLMVHENYLGAPAELDAEVNGYGAEHNNMIDFADKYHDFLSSLYVSRTDFTTSGKKGSGGVRCCQAEKCTAELSDAKPYRRRHKVCENHAKAQVVMVCGIRQHFCQQCSRFHELGDFDETKRSCRRRLAGTTRGEGRARRHHKQN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1511 349 Pfam SBP domain 268 336 IPR004333 GO:0003677
Sto13g1511 349 SUPERFAMILY SBT domain 266 340 IPR036893 GO:0003677|GO:0005634
Sto13g1511 349 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 232 336 - -
Sto13g1511 349 Gene3D - 263 329 IPR036893 GO:0003677|GO:0005634
Sto13g1511 349 ProSiteProfiles Zinc finger SBP-type profile. 265 342 IPR004333 GO:0003677
Sto13g1511 349 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 232 336 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1511 Sto-Chr13 21850632 21858647 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1511 258 344 SBP-box Gene Family AT1G53160 54.902 2.09e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sto13g1511 SBP 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1511 - - qlo:115958592 132.109