Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1342 ATGAAAGGAATATCCTCTCGAGGTAATCATATTTGCTTCGGTAGATATGCTCTTCAGGCACTTGAGCCCACTTGGATCACATCTAGACAAATAGAAGCAGGACGGCGGGCAATGTCACGAAATGCCCGCCGCGGTGGAAAAATATGGGTACGCATATCTCCAGACAAACCGGTTACAGTAAGACCTACAGAAACACGTATGGGTTCGGGAAAAGGATCTCCCGAATATTGGGTAGCTGTCGTTAAACCGGGTAGAATACTTTATGAAATGGCCGATAACAGCGGGGCCCGCGAATTGATGTGTATTCGAATCATAGGAACTAGTAATCGACGATATGCTTATATTGGTGACGTTATTGTTGCTGTAATAAAGGAAGCAGTACCAAATACTCCTTTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGGACTTGTAAAGAACTCAAACGTAACAACGGTATGATAATACAATATGATGATAATGCTGCGGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATCGCCCGGGAATTGAGACAGTTAAATTTCACAAAAATAGTTTCATTAGCACCCGAGGTATTATAA 609 0.4187 MKGISSRGNHICFGRYALQALEPTWITSRQIEAGRRAMSRNARRGGKIWVRISPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMADNSGARELMCIRIIGTSNRRYAYIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELKRNNGMIIQYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEVL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1342 202 Pfam Ribosomal protein L16p/L10e 2 98 IPR016180 GO:0003735|GO:0005840|GO:0006412
Sto13g1342 202 TIGRFAM rplN_bact: ribosomal protein uL14 89 202 IPR005745 GO:0003735|GO:0006412|GO:0015934
Sto13g1342 202 ProSitePatterns Ribosomal protein L16 signature 2. 66 77 IPR020798 GO:0003735|GO:0005840|GO:0006412
Sto13g1342 202 Hamap 50S ribosomal protein L14 [rplN]. 80 202 IPR000218 GO:0003735|GO:0005840|GO:0006412
Sto13g1342 202 TIGRFAM rplP_bact: ribosomal protein uL16 1 92 IPR000114 GO:0003735|GO:0006412|GO:0019843
Sto13g1342 202 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 88 202 IPR000218 GO:0003735|GO:0005840|GO:0006412
Sto13g1342 202 PANTHER RIBOSOMAL PROTEIN L14B/L23E-RELATED 88 202 - -
Sto13g1342 202 SUPERFAMILY Ribosomal protein L14 90 202 IPR036853 GO:0003735|GO:0005840|GO:0006412
Sto13g1342 202 CDD Ribosomal_L16_L10e 7 90 IPR016180 GO:0003735|GO:0005840|GO:0006412
Sto13g1342 202 ProSitePatterns Ribosomal protein L14 signature. 140 166 IPR019972 -
Sto13g1342 202 Pfam Ribosomal protein L14p/L23e 89 202 IPR000218 GO:0003735|GO:0005840|GO:0006412
Sto13g1342 202 SUPERFAMILY Ribosomal protein L16p/L10e 1 92 IPR036920 GO:0003735|GO:0005840|GO:0006412
Sto13g1342 202 Gene3D Ribosomal protein L14 65 202 IPR036853 GO:0003735|GO:0005840|GO:0006412
Sto13g1342 202 SMART Ribosomal_L14_2 86 202 IPR000218 GO:0003735|GO:0005840|GO:0006412
Sto13g1342 202 PRINTS Ribosomal protein L16 signature 8 20 IPR000114 GO:0003735|GO:0006412|GO:0019843
Sto13g1342 202 PRINTS Ribosomal protein L16 signature 26 37 IPR000114 GO:0003735|GO:0006412|GO:0019843
Sto13g1342 202 PRINTS Ribosomal protein L16 signature 42 71 IPR000114 GO:0003735|GO:0006412|GO:0019843
Sto13g1342 202 PRINTS Ribosomal protein L16 signature 72 101 IPR000114 GO:0003735|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1342 Sto-Chr13 19163266 19164133 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1342 91 202 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 34.483 1.39e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1342 K02874 - dct:114579343 310.457