LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto13g1195	ATGGGTTGTATATGCTCGAAAGGGACATCTTCAAATGAGTACGTTGCTGAAAACCTTGACATAGACAAAGATTCAAAGGCAAATAGAATCTCAAAACATTTGAATACGGGAGAGAAGGTCACAATAGAGGCTGATGGTGGTGGTAATGAAGCTACTGCGCGGTTGATATCTAATCCTTCTCAGAATGGAACTGCAGGATCCACTCCCGTTTCATCAGATGAGGGGGAGAAGAAGGGAGAGACTACTGCAAAACCACTGGTTCGGATGGCCTCAATTGTCGGAACTGGAAGTGGAGGACAAGTACAACCTAGGATGACTAGGATAGCTAGTGTAACTAAAGGGGAAAGAGGAGCTCAAGTTCTTGCTGGCTGGCCTTCTTGGCTGACTGCAGTTGCTGGGGAAGCCATTAATGGTTGGATACCTCGCAGAGCTGATTCATATGAGAAGTTGGAGAAGATTGGGCAAGGAACTTACAGCAGTGTTTACAGAGCCCGTGATcttgagacaaataaaattgTTGCATTGAAGAAGGTCCGGTTTGCCAATATGGATCCAGAAAGTGTTCGATTTATGGCAAGAGAAATTATTGTTCTGCGAAGGCTTGATCATCCAAATGTCATGAAACTTGAAGGCATTATTACTTCAAGGGTCTCTGGTAGCTTGTATCTTGTTTTTGAATATATGGAGCATGATCTTGCTGGGCTTTCAGCGTTACCTGGCATCAAGTTCACTGAAGCACAGATCAAATGTTACATGCAACAGCTGCTTCGTGGTATTGAGCATTGCCACAGTCATGGTGTTCTGCACCGAGACATCAAAGGCTCAAATCTTCTGATTGACAAGAATGGAAATCTAAAGATTGCTGATTTTGGGCTTGCAACTTTGTTTCAGCCATCTAAGGGGCAGGTTTTAACAAGTCGTGTGGTAACCTTATGGTATCGACCGCCTGAACTTCTCCTGGGAGCTACAGATTATGGAGTTGCAGTGGACTTGTGGAGTGCTGGTTGTATTCTTGCAGAATTGTTTGCTGGAAAGCCTATAATGCCAGGCCGAACAGAGGTGGAGCAACTTCATAAAATCTTCAAACTCTGTGGGTCACCTTCTGAAGAATACTGGAAGAAGTCAAAACTACCGCATGCAACAATTTTCAAACCTCAACATCCCtacaaacgtgttgttgctgaGACATTTAAGGATTTTCCTCCATCGGCACTAAGTCTTTTGGAGGTCCTTCTTGCTATAGAACCTGAGGATCGAAGAACTGCTTCTTTAGCACTTCAGAGCGAGTTCTTCACAACAAAGCCGCTTCCTTGTGATCCATCAAATTTGCCAAAGTACCCACCAAGTAAGGAGTTTGATGCCAAGTTTCGACAAGAAGAAGCCAGAAGACGAAGAGCTGCAGGTAATAAAGGAAATGAAGGGGAATCAGTTAGGAAGGATATCAAAGAATCTAAAGCTGTGCCAGCGCCAGATGCTAATGCTGAGTTGCGGGCATCTATAGAGAAGAGACAAGGGCAGGTTAACTCTAAATGCATCAGTGAGAAGTATAATCCTGATGATGAGGATAGTGGTTCTGGCTTCCCTATTGAACCTTCAAGAACAAGACCACTCAATTCCTTCTCTCATTCCGGTCAGTCAATGCATCCGAGTTCATATGGATCTTCACGCAATATGAATTTGAACAAAGAAGATGCTCTTGCCTGCCCTGCCCATGTCCACAATTCACGAAATCCTGCTGCATTGAGAAAACAGAGATCCTACATGCACGGTAATGCTGCACAATTGTCGAGATTTGCTAATTCAGTTGCTGCTGGAGGTGGCTCAAAGCTTGATATGAGCGGAGATGCTAGTGTGAATTCACAATGGTCAGAGGATTGCTTTGGCACTAGATATAGCCATCTAGTTGATGGTGAATCCAAGCAATTGCTCAAGTCTGCACTCAAGAAGGACATCAATCCTCTCGCAAAGGATCCTACCATGGCCTATGCTCCAAAAAATGGTCATATACATTATTCAGGACCGTTGGTTCCCCGAGGGGAAGATCTTGATGAAATGCTTAAGGAACATGAAAGGCAAATCCAACAGGCTGTCCGCAAGGCACGCACAGATAAGATTAAGATAAATAGATCTGACAATGAGAATGGCCAAACTGAATCACTACTTCACCATGGCAGAAATCACAAAAATAACTCGAGAACTACTGGAGCTTCGATGAGGTTCTCGACAGCACTGGATGATTGTAACTACTGTCGAAGTGAAACTGATTATGCTGAAGCAGATTACACTTCATTGAAATTGTGGAGTGTAATAGGTTGTCAAGTTTGA	2325	0.4314	MGCICSKGTSSNEYVAENLDIDKDSKANRISKHLNTGEKVTIEADGGGNEATARLISNPSQNGTAGSTPVSSDEGEKKGETTAKPLVRMASIVGTGSGGQVQPRMTRIASVTKGERGAQVLAGWPSWLTAVAGEAINGWIPRRADSYEKLEKIGQGTYSSVYRARDLETNKIVALKKVRFANMDPESVRFMAREIIVLRRLDHPNVMKLEGIITSRVSGSLYLVFEYMEHDLAGLSALPGIKFTEAQIKCYMQQLLRGIEHCHSHGVLHRDIKGSNLLIDKNGNLKIADFGLATLFQPSKGQVLTSRVVTLWYRPPELLLGATDYGVAVDLWSAGCILAELFAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHPYKRVVAETFKDFPPSALSLLEVLLAIEPEDRRTASLALQSEFFTTKPLPCDPSNLPKYPPSKEFDAKFRQEEARRRRAAGNKGNEGESVRKDIKESKAVPAPDANAELRASIEKRQGQVNSKCISEKYNPDDEDSGSGFPIEPSRTRPLNSFSHSGQSMHPSSYGSSRNMNLNKEDALACPAHVHNSRNPAALRKQRSYMHGNAAQLSRFANSVAAGGGSKLDMSGDASVNSQWSEDCFGTRYSHLVDGESKQLLKSALKKDINPLAKDPTMAYAPKNGHIHYSGPLVPRGEDLDEMLKEHERQIQQAVRKARTDKIKINRSDNENGQTESLLHHGRNHKNNSRTTGASMRFSTALDDCNYCRSETDYAEADYTSLKLWSVIGCQV	774

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto13g1195	774	MobiDBLite	consensus disorder prediction	53	71	-	-
	Sto13g1195	774	SUPERFAMILY	Protein kinase-like (PK-like)	140	439	IPR011009	-
	Sto13g1195	774	PANTHER	KINASE CDK9, PUTATIVE-RELATED	94	704	-	-
	Sto13g1195	774	ProSiteProfiles	Protein kinase domain profile.	147	431	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto13g1195	774	Coils	Coil	679	706	-	-
	Sto13g1195	774	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	267	279	IPR008271	GO:0004672\|GO:0006468
	Sto13g1195	774	Gene3D	Phosphorylase Kinase; domain 1	142	234	-	-
	Sto13g1195	774	Gene3D	Transferase(Phosphotransferase) domain 1	235	470	-	-
	Sto13g1195	774	ProSitePatterns	Protein kinases ATP-binding region signature.	153	176	IPR017441	GO:0005524
	Sto13g1195	774	MobiDBLite	consensus disorder prediction	532	556	-	-
	Sto13g1195	774	MobiDBLite	consensus disorder prediction	459	486	-	-
	Sto13g1195	774	CDD	STKc_CDK9_like	147	431	-	-
	Sto13g1195	774	MobiDBLite	consensus disorder prediction	459	556	-	-
	Sto13g1195	774	MobiDBLite	consensus disorder prediction	50	84	-	-
	Sto13g1195	774	Pfam	Protein kinase domain	147	431	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto13g1195	774	MobiDBLite	consensus disorder prediction	707	735	-	-
	Sto13g1195	774	SMART	serkin_6	147	431	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto13g1195	774	MobiDBLite	consensus disorder prediction	707	725	-	-
	Sto13g1195	774	PANTHER	CELL DIVISION PROTEIN KINASE	94	704	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto13g1195	Sto-Chr13	16843662	16850023	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto13g1195	139	470	Core Cell Cycle Gene Families	AT5G10270	52.000	5.41e-117	361

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Sto13g1195		Pkinase	5.1e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto13g1195	-		-	dzi:111281982	964.526