Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1098 ATGCATCAAGGATTAGAAAAGCAAATGCCTTCCTTTAATTTGCCCTCTAAAATTTTGTGTAAGGTTGTCAATGTTCATCTTAGGGCTGAACCTGAAACAGATGAAGTTTATGCACAGATAACTTTGCTGCCTGAAGCTGATCAAAGTGAAGTGACAAGCCCCGATGATCCTCTGCCAGAACCTCCTAGGTGCACAGTCCATTCCTTTTGCAAAACGCTTACTGCATCTGACACAAGCACCCATGGAGGATTTTCTGTTCTTCGAAGACATGCAGATGATTGTTTGCCGCCATTGGACATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGTAATGAATGGCATTTTCGACATATATTTCGAGGGCAACCTAGACGCCACTTGCTTACGACAGGATGGAGTGTCTTTGTGAGTTCCAAAAAATTGGTGGCTGGTGATGCATTTATATTCCTAAGAGGTGAAAATGGAGAGCTGCGTGTTGGAGTTAGGAGGCTGATGAGACAGCAAAACAACATGCCCTCTTCTGTTATATCCAGTCACAGTATGCACCTTGGTGTTCTGGCCACTGCATCTCATGCCATTGCAACTGGAACATTGTTTTCTGTGTTTTACAAGCCCAGAACAAGTCGATCAGAGTTTATTGTGAGTGTCAACAAGTATCTTGAAGCTCGGACTCACAAGCTTTCTGTTGGGATGAGATTCAAGATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGGTTCAGTGGCACAATTGTGGGTGTTGGAGATAATAAATCTCCTGTTTGGGCAGATTCTGAATGGCGATCATTAAAGGTGCAATGGGATGAACCATCATCAATTATGCGTCCTGAAAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGGCTACTGCCCCTGCAAACTCGCAACCAACCCAAAGGAACAAGAGGGCAAGGCCTCCTGTTCTACCTTCGACAGTACCTGATTCTTCTCTGCATGGCACGTGGAAATCACCGGTTGAATCTTCACCTCTCTCTTACTGTGACTCACAAGGTCGGGATATGTATCCACCATCCAAGTTCAATTCTACTGCATCTAACTTTCTTGGTTTTGGTGGGAATAGCACTCTCAGAGCTGCTTCCAATAATTCCATATATTGGTCAAATAGGTTGGAGAACTCCACAGAGTATTTTTCGCCTATTGGCCTTAAAGAATCTGGTGAGAAGAAACAAGGTACTGGAAATGGCTGTAGGCTCTTTGGGATTCAACTACTTGACAATTCTAATGTAGAAGAAAGTTTGCCAATAGTCACATTGTCAGAGAGGGTGGGGGATGATAGGTCTGTTCCATGTTTAGATGCTGAGTATGACCAGCATTCTGAACCATCAAATGTCAATCGATCTTGTATTCCTTCAGTAAGTTGTGATGCTGACAAATCAAGCCTTCAGTCTCCTCAGGAGTCACAAAGCAGGCAATTGAGGAGCTGCACTAAGGTTCACATGCAAGGAATGGCTGTTGGCAGAGCTGTGGATTTGACACGGTTTGATGGATATGAAGATCTTCTTACAAAATTGGAGGAAATGTTTGACATCAAGGGTGAGCTTGGTGGATCCTCGAAGAAATGGCAGGTTGTCTACACTGATAATGAAGATGATATGATGATGGTTGGGGATGACCCATGGAATGAGTTCTGTACTGTGGTCAGAAAAATTTTCATCTACACACCAGAAGAGGTGAAGAAGCTTTCACCGAAAGTAGGGCTTCCTATCAATGAAGAAGTTGTTAAACCAAGCAAGCTGGATTCTGATGCAGCACTTAATACTGAGGACCAGTCATCTATTGTGGGTCCTGGTTGCTAG 1857 0.4383 MHQGLEKQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEARTHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSPVWADSEWRSLKVQWDEPSSIMRPERVSPWELEPLVATAPANSQPTQRNKRARPPVLPSTVPDSSLHGTWKSPVESSPLSYCDSQGRDMYPPSKFNSTASNFLGFGGNSTLRAASNNSIYWSNRLENSTEYFSPIGLKESGEKKQGTGNGCRLFGIQLLDNSNVEESLPIVTLSERVGDDRSVPCLDAEYDQHSEPSNVNRSCIPSVSCDADKSSLQSPQESQSRQLRSCTKVHMQGMAVGRAVDLTRFDGYEDLLTKLEEMFDIKGELGGSSKKWQVVYTDNEDDMMMVGDDPWNEFCTVVRKIFIYTPEEVKKLSPKVGLPINEEVVKPSKLDSDAALNTEDQSSIVGPGC 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1098 618 Pfam B3 DNA binding domain 69 169 IPR003340 GO:0003677
Sto13g1098 618 Gene3D - 66 171 IPR015300 -
Sto13g1098 618 Gene3D - 488 582 - -
Sto13g1098 618 PANTHER AUXIN RESPONSE FACTOR 9 2 601 - -
Sto13g1098 618 SUPERFAMILY DNA-binding pseudobarrel domain 58 198 IPR015300 -
Sto13g1098 618 ProSiteProfiles B3 DNA-binding domain profile. 69 171 IPR003340 GO:0003677
Sto13g1098 618 MobiDBLite consensus disorder prediction 327 342 - -
Sto13g1098 618 CDD B3_DNA 67 169 IPR003340 GO:0003677
Sto13g1098 618 Pfam Auxin response factor 195 277 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sto13g1098 618 ProSiteProfiles PB1 domain profile. 493 586 IPR000270 GO:0005515
Sto13g1098 618 MobiDBLite consensus disorder prediction 303 342 - -
Sto13g1098 618 SUPERFAMILY CAD & PB1 domains 495 570 - -
Sto13g1098 618 Gene3D - 232 305 - -
Sto13g1098 618 Pfam AUX/IAA family 486 583 IPR033389 -
Sto13g1098 618 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 601 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto13g1098 618 SMART B3_2 69 171 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1098 Sto-Chr13 12984760 13017446 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1098 1 612 B3 DNA Binding Superfamily AT1G59750 71.475 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sto13g1098 AUX_IAA 3.1e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1098 K14486 - gmx:100793224 1102.04